genome.fa.s3609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003609.1 Hibiscus syriacus cultivar Beakdansim tig00007636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124482

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6141--6188	23	2.1	23	88	0	69	35	12	18	33	1.89
6943--7005	23	2.7	23	92	0	99	38	20	4	36	1.74
7407--7492	39	2.2	39	95	0	154	17	13	19	48	1.80
7744--7780	18	2.1	18	89	0	56	51	10	5	32	1.60
8168--8218	25	2.0	25	92	0	84	39	19	7	33	1.81
8484--8535	23	2.3	22	90	6	77	44	19	1	34	1.62
8494--8556	23	2.7	23	90	0	90	38	19	6	36	1.77
8902--8967	25	2.6	25	78	0	78	43	12	9	34	1.73
11436--12144	183	3.9	183	97	0	1283	33	16	14	35	1.89
13566--13607	3	14.0	3	84	0	57	26	33	2	38	1.69
13567--13607	9	4.6	9	90	0	64	24	34	2	39	1.69
13570--13654	12	6.9	12	76	10	82	21	35	8	35	1.83
13570--13657	6	14.3	6	72	9	52	20	35	7	36	1.82
14975--16485	198	7.7	198	92	4	2577	31	15	15	37	1.89
15883--16248	178	2.1	177	97	1	691	31	17	15	35	1.91
16058--16482	199	2.1	200	96	1	782	30	16	15	36	1.91
16589--16637	19	2.6	19	93	0	80	57	10	2	30	1.43
18430--18495	33	2.0	33	90	0	105	22	48	0	28	1.51
18528--18592	21	3.1	21	80	6	69	15	29	15	40	1.88
20983--21028	20	2.3	20	89	10	76	17	17	10	54	1.70
26317--26361	2	23.0	2	95	4	83	48	0	0	51	1.00
26535--26600	16	4.1	16	71	7	53	53	0	6	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26546--26623	32	2.4	32	80	4	86	51	1	7	39	1.39
27042--27118	31	2.5	31	76	0	82	41	5	7	45	1.55
39005--39167	87	1.9	87	92	2	274	42	9	12	34	1.76
39303--40324	182	5.6	182	94	1	1750	27	16	13	42	1.85
43027--43375	184	1.9	184	94	2	621	33	15	14	36	1.88
44661--44700	12	3.3	12	85	0	53	20	32	7	40	1.80
46713--46768	28	2.0	28	96	0	103	51	23	0	25	1.48
55574--55631	23	3.0	18	82	14	55	22	34	27	15	1.94
55614--55651	20	1.9	20	88	0	58	26	36	26	10	1.89
65346--65933	200	2.9	200	96	0	1095	31	18	13	36	1.90
66168--66216	19	2.6	19	90	6	73	55	10	4	30	1.52
67767--67854	33	2.7	33	92	3	142	4	44	0	51	1.22
68041--68106	33	2.0	33	93	0	114	22	46	0	30	1.52
70419--70852	182	2.4	179	84	6	573	26	16	14	42	1.86
70991--71015	11	2.3	11	100	0	50	36	24	8	32	1.84
72250--72359	20	5.4	20	78	8	114	12	20	21	45	1.84
72309--72436	22	6.0	21	71	17	104	18	17	22	40	1.91
72289--72422	42	3.2	42	88	3	191	16	17	22	44	1.87
72289--72422	41	3.2	41	86	7	173	16	17	22	44	1.87
72518--72561	6	7.5	6	94	5	81	34	50	15	0	1.45
72718--72760	20	2.2	20	100	0	86	27	9	32	30	1.88
73204--73256	22	2.4	22	93	0	97	37	28	16	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73248--73320	20	3.6	20	75	3	83	36	26	21	15	1.93
73268--73341	21	3.6	21	75	10	89	32	28	18	20	1.96
73245--73342	41	2.4	41	98	0	187	35	26	19	18	1.95
75530--75572	21	2.0	23	86	9	63	53	2	0	44	1.13
75535--75579	21	2.1	22	84	8	58	55	2	0	42	1.12
103323--103413	31	3.0	30	78	15	80	40	10	7	40	1.69
103340--103423	31	2.7	31	81	7	91	42	10	4	41	1.60
104247--104307	31	2.0	31	83	6	79	37	6	9	45	1.63
107464--107542	32	2.5	32	82	0	86	20	18	13	46	1.83
107482--107544	32	2.0	32	90	0	99	17	19	14	49	1.80
113366--113439	29	2.5	30	79	14	91	51	5	4	39	1.44
115683--115765	32	2.7	30	74	9	85	39	7	24	28	1.82
116006--116040	18	1.9	18	94	0	61	20	22	34	22	1.97
116794--116916	32	3.8	32	70	6	88	34	13	12	39	1.81
117593--117624	2	16.5	2	93	6	57	46	0	0	53	1.00
118352--118388	19	1.9	19	88	0	56	35	29	13	21	1.92
118421--118486	21	3.2	21	79	10	73	24	18	22	34	1.96
118516--118588	20	3.7	20	94	0	119	30	28	17	23	1.97
118495--118644	81	1.9	81	80	5	178	32	27	17	23	1.97
121648--121682	18	1.9	18	94	0	61	54	22	2	20	1.58
121858--122113	20	13.9	20	73	17	187	35	21	20	22	1.96
121877--122020	54	2.7	54	93	0	234	38	21	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121938--122147	34	5.9	34	72	15	163	36	21	20	21	1.96
121918--122125	73	2.8	73	89	3	310	37	22	20	20	1.95
122239--122314	30	2.3	34	76	21	97	53	13	2	30	1.53
122254--122319	30	2.2	30	97	0	123	54	13	1	30	1.48
123572--123613	21	2.0	21	100	0	84	42	19	19	19	1.89
123704--123803	21	4.9	21	72	9	80	24	20	35	21	1.96
124274--124314	20	2.0	20	100	0	82	48	24	12	14	1.78
124284--124409	20	6.4	19	86	4	90	38	23	17	20	1.93
124304--124415	39	2.9	38	78	6	125	37	22	19	20	1.94

Tables:   1

The End!