genome.fa.s3610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003610.1 Hibiscus syriacus cultivar Beakdansim tig00007637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115561

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2215--2254	16	2.5	16	95	0	71	47	15	12	25	1.80
15059--15181	64	1.9	64	82	9	153	27	14	20	37	1.92
19881--19969	25	3.4	25	79	20	94	43	3	0	52	1.17
19892--19967	24	3.0	24	78	21	84	43	3	0	52	1.19
20969--21134	79	2.1	80	83	2	217	36	14	22	26	1.92
35816--36395	298	1.9	298	97	0	1090	35	21	15	27	1.94
37267--37321	7	7.9	7	100	0	110	0	14	29	56	1.39
38266--38358	47	2.0	48	89	2	143	43	18	4	34	1.70
56422--56471	22	2.3	21	80	10	55	36	2	10	52	1.47
62671--62820	63	2.3	64	95	2	266	55	4	8	31	1.51
70493--70541	14	3.4	14	72	5	53	40	18	22	18	1.91
70489--70598	29	3.8	29	92	2	177	44	15	21	18	1.86
74120--74191	36	2.0	36	97	0	135	47	15	5	31	1.68
76556--76652	37	2.6	37	86	0	140	40	16	12	30	1.85
77485--77511	2	13.5	2	100	0	54	48	0	0	51	1.00
77511--77599	8	10.4	8	72	15	63	14	7	0	77	0.98
77511--77599	17	5.2	16	75	18	63	14	7	0	77	0.98
77513--77592	12	6.5	12	73	15	74	15	7	0	77	0.98
80666--80696	15	2.1	15	93	0	53	12	16	12	58	1.64
81847--81916	14	4.7	15	78	18	76	81	4	14	0	0.84
81854--81928	31	2.3	33	81	9	91	81	4	13	1	0.90
82534--82608	22	3.4	22	94	0	132	37	28	13	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83356--84616	106	12.0	106	90	1	1849	34	24	18	22	1.96
83356--84616	423	3.0	422	91	1	1958	34	24	18	22	1.96
85347--85451	37	2.8	37	88	0	156	40	15	15	29	1.88
86295--86335	15	2.6	16	81	14	50	14	7	0	78	0.96
86288--86347	25	2.4	25	83	8	68	15	8	0	76	1.00
86288--86355	25	2.7	24	78	15	66	16	8	0	75	1.05
88324--88392	16	4.2	17	73	14	65	21	7	4	66	1.34
88324--88360	17	2.2	18	90	9	60	21	5	5	67	1.31
96669--96709	18	2.3	18	86	0	55	60	7	26	4	1.43
97742--97770	14	2.1	14	100	0	58	6	20	6	65	1.40
104799--104846	19	2.5	19	86	3	60	37	27	14	20	1.92
104820--104874	20	2.8	20	75	5	58	30	29	14	25	1.95
104919--104957	20	2.0	20	89	0	60	38	17	20	23	1.93
104941--105051	20	5.5	20	82	6	134	31	28	17	22	1.96
105863--105922	24	2.5	24	83	0	84	25	18	18	38	1.93
105915--105975	30	2.0	30	100	0	122	40	6	19	32	1.77
106149--106175	14	1.9	14	100	0	54	44	29	18	7	1.77
108278--108700	140	3.0	140	96	0	774	28	13	14	43	1.83
108671--108910	20	12.6	20	80	10	245	33	21	19	25	1.97
108679--108835	54	2.8	57	88	5	212	32	22	19	25	1.97
108900--108957	20	2.9	21	77	10	68	12	15	27	44	1.82
109066--109227	27	5.3	27	68	23	108	53	17	1	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109082--109201	36	3.6	36	70	19	132	54	16	2	26	1.55
109009--109299	63	4.5	63	86	9	333	50	17	2	29	1.60
110606--110726	42	2.9	42	79	4	136	26	19	32	22	1.97
111213--111255	19	2.2	20	91	4	70	46	23	16	13	1.83
111242--111290	20	2.5	20	93	0	80	34	26	20	18	1.95
111295--111348	19	2.8	19	88	0	63	50	25	14	9	1.73
111312--111348	19	1.9	19	100	0	74	48	29	16	5	1.68
111352--111432	33	2.4	34	85	8	112	14	18	19	46	1.83
111424--111492	20	3.4	21	88	4	81	18	17	24	39	1.92
111479--111521	19	2.2	20	87	4	61	16	13	20	48	1.80
113405--113521	20	6.2	20	76	11	104	40	23	17	17	1.91
113404--113506	53	1.9	54	88	2	154	42	24	17	15	1.88
113896--113953	22	2.6	22	86	5	82	17	13	46	22	1.83
114131--114243	40	2.8	39	83	4	145	26	18	23	31	1.97
114120--114243	20	6.2	20	75	10	101	26	18	24	30	1.98
114131--114243	41	2.8	41	83	4	149	26	18	23	31	1.97
114258--114303	19	2.4	19	85	3	56	21	17	30	30	1.96
114269--114305	19	1.9	19	94	0	65	21	16	29	32	1.95
114568--114610	20	2.2	20	88	8	63	37	6	30	25	1.82

Tables:   1

The End!