genome.fa.s3611.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003611.1 Hibiscus syriacus cultivar Beakdansim tig00007640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155722

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624--773	60	2.5	60	78	6	162	36	16	4	44	1.66
1398--1442	21	2.1	21	92	8	74	62	0	0	37	0.96
3490--3574	29	3.0	29	83	6	102	41	14	7	37	1.73
9280--9352	26	2.9	25	83	4	101	17	26	13	42	1.87
10315--10371	28	2.1	28	90	3	89	42	12	7	38	1.70
10320--10385	28	2.3	28	84	2	78	42	12	7	37	1.71
10362--10423	24	2.6	24	81	0	79	54	6	6	32	1.51
11574--11610	2	18.5	2	100	0	74	51	0	0	48	1.00
21591--21914	117	2.8	116	80	6	325	33	18	27	20	1.96
21718--21969	117	2.2	117	91	0	405	31	19	25	23	1.98
22012--22731	156	4.6	156	91	1	1156	34	14	28	22	1.94
23777--23807	16	2.0	15	93	6	53	64	6	19	9	1.45
27978--28069	41	2.2	42	80	7	105	51	14	20	14	1.76
27993--28070	41	1.9	41	89	0	120	51	14	20	14	1.76
31376--31416	14	2.9	14	89	7	57	58	24	12	4	1.53
31374--31458	33	2.6	34	81	5	102	60	21	9	9	1.56
31565--31630	24	2.8	24	90	0	96	54	15	16	13	1.71
36270--36304	10	3.5	10	88	11	54	31	0	0	68	0.90
37666--37758	31	3.0	31	75	7	98	22	12	24	39	1.89
38214--38252	20	2.0	20	90	5	62	38	5	0	56	1.22
38451--38616	16	10.3	16	70	1	107	15	15	26	43	1.85
38441--38588	81	1.8	79	85	2	206	13	16	27	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38501--38616	32	3.6	32	94	0	187	12	14	27	44	1.82
39346--39709	159	2.3	158	84	4	459	37	9	32	20	1.85
42637--42663	3	9.0	3	100	0	54	33	0	0	66	0.92
44713--44757	23	2.0	23	82	8	56	35	31	24	8	1.86
45613--45669	29	1.9	30	85	3	80	21	17	15	45	1.85
46054--46079	11	2.4	11	100	0	52	61	0	0	38	0.96
47540--47574	8	4.2	8	89	7	52	71	0	0	28	0.86
47542--47574	17	1.9	17	93	0	57	72	0	0	27	0.85
47555--47611	28	2.0	28	83	6	71	57	0	0	42	0.98
57592--57683	40	2.4	37	77	12	112	43	1	7	47	1.39
57833--57864	2	16.0	2	100	0	64	50	0	0	50	1.00
58060--58097	2	19.0	2	100	0	76	50	0	0	50	1.00
59385--59424	20	2.0	20	95	0	71	37	12	10	40	1.77
59566--60034	157	3.0	157	93	0	776	37	18	19	25	1.94
68032--68072	2	21.0	2	95	5	75	48	0	0	51	1.00
68531--69105	112	5.1	112	93	0	981	45	14	15	25	1.84
68531--69105	223	2.6	224	94	0	990	45	14	15	25	1.84
69053--69385	162	2.1	162	96	0	612	42	12	17	28	1.85
70030--70077	23	2.1	23	88	0	69	39	16	8	35	1.79
84952--85232	139	2.0	140	99	0	555	39	20	11	28	1.88
85788--86541	84	9.2	81	78	7	747	30	25	20	24	1.99
85760--86604	165	5.1	164	85	4	1049	30	24	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86981--87710	106	6.9	106	91	1	1124	34	24	17	23	1.96
87890--88097	84	2.5	82	81	5	218	31	24	20	23	1.98
91681--91799	59	2.0	59	98	0	229	38	19	13	28	1.89
92951--92977	2	13.5	2	100	0	54	48	0	0	51	1.00
101663--101696	15	2.3	15	89	0	50	29	0	2	67	1.05
101905--101942	16	2.4	16	95	0	67	44	21	7	26	1.79
105670--105704	18	1.9	18	88	0	52	28	17	0	54	1.43
106993--107029	7	5.0	7	90	9	56	27	27	32	13	1.94
106980--107048	8	9.1	8	75	21	69	23	27	34	14	1.94
106980--107029	15	3.2	15	94	5	82	28	30	30	12	1.92
107022--107097	13	5.5	13	75	14	62	17	19	44	18	1.87
107016--107068	18	2.8	18	88	8	70	15	20	45	18	1.85
107022--107083	31	2.0	31	87	6	90	16	19	45	19	1.86
110701--110735	18	1.9	18	88	0	52	28	17	0	54	1.43
112009--112070	17	4.1	15	82	12	65	22	27	35	14	1.93
112009--112070	8	8.1	8	75	21	62	22	27	35	14	1.93
112030--112119	13	6.3	13	74	15	63	18	20	43	17	1.88
112036--112090	18	2.9	18	89	8	74	14	21	45	18	1.85
112044--112105	31	2.0	31	87	6	90	16	19	45	19	1.86
113711--113786	24	3.6	22	76	20	74	30	21	27	21	1.98
118502--118613	39	2.9	39	71	9	95	45	1	15	37	1.56
122176--122217	20	2.1	20	100	0	84	52	19	9	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125919--125983	27	2.7	23	83	9	76	12	29	26	32	1.92
126023--126184	76	2.1	76	93	2	272	32	11	30	25	1.92
129425--129588	8	23.4	7	64	24	62	44	4	2	48	1.35
129436--129698	42	6.3	42	87	3	300	42	5	3	48	1.43
129604--129765	70	2.3	68	95	0	225	40	6	4	48	1.48
129450--129719	28	9.6	28	75	11	214	42	6	3	48	1.45
129674--129787	42	2.7	42	87	0	156	43	4	3	48	1.40
129503--129792	84	3.5	82	76	13	204	43	5	3	47	1.44
130662--130719	16	3.6	16	72	4	53	72	5	0	22	1.04
132562--132722	76	2.1	76	95	0	286	26	30	11	32	1.91
132762--132826	27	2.7	23	83	9	76	32	26	29	12	1.92
134532--134561	15	2.0	15	100	0	60	13	26	46	13	1.80
140952--141022	31	2.3	32	82	4	83	45	7	7	40	1.58
141088--141146	31	1.9	31	82	6	75	54	6	8	30	1.57
142423--142463	20	2.0	21	85	9	57	26	7	14	51	1.69
144193--144248	26	2.2	26	100	0	112	35	10	33	19	1.87
146450--146491	22	1.9	22	85	0	57	9	21	11	57	1.63
148487--148544	26	2.2	25	82	14	73	48	13	0	37	1.43
151912--151936	13	1.9	13	100	0	50	24	20	40	16	1.91

Tables:   1

The End!