Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003612.1 Hibiscus syriacus cultivar Beakdansim tig00007641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88323

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
490--585
27
3.5
28
75
16
92
52
1
4
42
1.27
568--637
23
3.0
24
74
19
58
54
0
4
41
1.20
490--599
26
4.0
27
76
13
75
53
0
3
41
1.24
589--637
25
2.0
25
84
8
64
55
0
6
38
1.25
544--645
27
4.1
24
70
26
61
51
0
4
43
1.23
11527--11570
22
2.0
23
86
4
63
56
2
0
40
1.11
18140--18179
16
2.5
16
95
0
71
25
12
15
47
1.80
27715--27750
3
12.0
3
93
0
63
63
0
2
33
1.08
32205--32229
12
2.1
12
100
0
50
76
0
24
0
0.80
36440--36470
6
5.2
6
96
0
53
3
12
48
35
1.58
38858--38936
14
5.9
14
76
11
85
11
12
17
58
1.63
38855--38936
24
3.2
24
80
12
101
12
12
17
58
1.63
38858--38916
28
2.1
28
93
0
100
10
13
16
59
1.61
55925--56027
33
3.2
33
88
2
156
45
14
6
33
1.71
56022--56063
21
2.0
21
95
0
75
50
7
14
28
1.69
61668--61734
29
2.3
29
84
0
80
41
5
5
46
1.53
64059--64145
38
2.3
38
97
0
165
40
10
5
43
1.63
74348--74384
19
1.9
19
88
0
56
32
27
16
24
1.96
74470--74522
20
2.7
20
90
0
79
43
18
16
20
1.88
74532--74584
20
2.7
20
93
0
97
28
28
20
22
1.99
75437--75490
24
2.2
24
93
0
90
20
18
20
40
1.91
77927--77975
6
8.7
6
80
17
52
32
16
0
51
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78225--78291
21
3.2
21
100
0
134
34
26
10
28
1.90
79880--80036
64
2.4
63
79
8
156
27
18
20
33
1.96
81326--81547
20
11.7
20
78
11
207
35
21
21
22
1.96
81351--81507
54
2.9
54
92
0
251
36
21
21
20
1.95
81331--81559
74
3.1
74
78
10
270
36
21
20
20
1.95
81419--81530
34
3.0
36
75
14
120
34
21
22
21
1.97
83120--83196
21
3.7
21
70
6
57
23
19
32
24
1.97
83679--83723
21
2.1
21
87
0
63
60
17
6
15
1.56
83706--83789
33
2.5
34
90
3
134
50
21
15
13
1.78
83795--83954
20
8.6
20
70
15
119
18
20
23
38
1.94
83795--83954
74
2.2
74
89
2
241
18
20
23
38
1.94
84073--84134
31
2.0
31
87
9
90
51
17
8
22
1.71
86334--86413
22
3.6
22
82
0
106
23
18
38
18
1.93
86576--86640
20
3.2
20
95
0
112
26
20
27
26
1.99
86768--86804
19
1.9
19
88
0
56
21
13
29
35
1.92

Tables:   1

The End!