genome.fa.s3613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003613.1 Hibiscus syriacus cultivar Beakdansim tig00007642_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110989

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2567--2591	2	12.5	2	100	0	50	52	0	48	0	1.00
2950--2991	16	2.5	17	80	7	50	42	14	0	42	1.45
8716--8864	35	4.2	36	85	7	182	34	4	18	42	1.71
8716--8862	72	2.1	69	86	6	197	34	4	18	42	1.71
9247--9281	12	2.9	12	100	0	70	17	17	22	42	1.88
9283--9314	16	1.9	17	93	6	57	37	6	21	34	1.79
13361--13421	21	3.2	21	65	29	64	34	4	18	42	1.71
13359--13473	35	3.2	36	86	7	164	33	5	18	42	1.72
17976--18097	35	3.4	36	85	6	167	33	4	18	43	1.71
26568--26659	36	2.6	36	96	0	166	28	28	8	34	1.87
28277--28315	17	2.3	17	100	0	78	56	10	5	28	1.54
35637--35681	21	2.0	25	83	16	62	51	6	6	35	1.55
35921--35972	17	3.1	16	78	10	52	32	0	3	63	1.12
40197--40227	16	1.9	16	93	0	53	32	0	9	58	1.31
41804--42178	191	2.0	191	94	1	662	38	9	10	41	1.73
42155--42194	18	2.1	20	86	9	57	60	5	2	32	1.32
42451--42496	16	3.1	16	74	25	55	50	6	0	43	1.28
42621--42830	89	2.4	88	80	8	205	52	2	5	39	1.39
42621--42830	29	7.1	29	73	12	153	52	2	5	39	1.39
42724--42841	59	2.0	59	82	9	143	58	1	5	33	1.32
45821--45875	13	4.2	13	75	13	58	49	12	3	34	1.59
45861--45926	33	2.0	32	88	2	96	45	12	7	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45921--45983	21	3.0	21	95	0	108	47	7	15	28	1.74
48222--48254	15	2.3	15	89	5	50	18	12	9	60	1.57
53732--53769	17	2.3	17	86	4	51	65	5	0	28	1.14
53847--53900	25	2.2	25	83	6	65	35	3	3	57	1.34
59858--59902	13	3.1	16	81	18	62	31	0	0	68	0.89
59864--59909	12	3.3	14	77	20	51	28	0	0	71	0.86
59861--59915	28	2.0	28	85	7	76	30	0	0	69	0.89
72019--72071	21	2.5	21	81	6	72	20	26	18	33	1.96
72061--72112	21	2.5	21	87	3	70	38	17	23	21	1.93
72046--72255	41	5.1	41	71	7	140	32	20	19	28	1.97
72122--72194	21	3.5	21	79	3	76	23	21	17	36	1.94
72184--72275	20	4.6	20	79	5	96	36	20	20	21	1.95
72061--72257	20	9.6	21	72	11	104	33	19	19	27	1.96
72486--72538	27	1.9	27	84	3	70	39	32	7	20	1.81
72858--72921	34	1.9	34	90	3	103	10	25	21	42	1.85
72853--72946	20	5.1	19	73	17	81	12	24	19	43	1.85
75091--75157	21	3.2	21	66	6	55	23	35	20	19	1.95
75064--75157	42	2.2	42	81	7	102	22	35	21	21	1.96
76508--76543	14	2.6	14	95	0	63	30	0	25	44	1.54
76672--76757	14	5.4	14	69	24	55	44	23	24	8	1.80
76650--76766	33	3.5	33	96	0	207	45	20	23	11	1.83
76650--76743	19	5.5	19	69	23	82	44	20	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76773--76998	106	2.1	105	85	10	294	34	13	10	41	1.78
80379--80432	24	2.2	24	93	0	90	42	20	14	22	1.88
80379--80446	24	2.8	24	86	0	64	39	20	14	25	1.91
81263--81313	20	2.5	20	77	0	66	37	19	17	25	1.94
81509--81578	20	3.5	20	69	7	70	40	24	18	17	1.91
81613--81663	14	3.3	14	76	23	57	11	21	19	47	1.81
83228--83318	42	2.2	42	86	3	132	21	15	40	21	1.90
83211--83307	21	4.8	20	71	8	79	19	18	39	22	1.93
83658--83730	20	3.7	20	90	0	74	34	27	16	21	1.95
83664--83749	40	2.2	40	85	4	111	34	26	20	17	1.95
83684--83770	20	4.4	20	88	1	122	36	24	24	14	1.93
83684--83825	19	7.6	19	82	10	123	40	22	22	14	1.89
83832--83897	19	3.7	19	75	19	79	12	19	21	46	1.82
83882--83936	20	2.8	19	83	8	65	16	23	23	36	1.94
84477--84524	18	2.7	18	93	0	87	14	12	45	27	1.81
85844--85881	20	1.9	20	94	0	67	52	21	15	10	1.72
86165--86208	22	2.0	22	95	0	79	18	15	45	20	1.85
86401--86467	20	3.3	20	87	0	98	28	13	29	28	1.94
86375--86512	41	3.4	41	78	2	152	23	15	25	36	1.93
86401--86509	20	5.4	20	80	6	94	23	15	28	32	1.95
86442--86572	41	3.2	41	82	5	131	21	21	21	35	1.96
86503--86591	21	4.3	21	94	1	144	22	22	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86503--86606	41	2.5	42	85	1	102	25	21	17	36	1.94
92348--92374	14	1.9	14	100	0	54	77	0	7	14	0.97
93971--94004	16	2.1	16	100	0	68	47	17	11	23	1.81
99299--99324	5	5.2	5	100	0	52	0	19	57	23	1.40
107744--107778	18	1.9	18	94	0	61	48	0	25	25	1.51

Tables:   1

The End!