genome.fa.s3614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003614.1 Hibiscus syriacus cultivar Beakdansim tig00007643_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129277

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351--394	23	2.0	23	86	4	63	54	0	4	40	1.21
6893--6942	27	1.9	26	84	8	66	46	2	2	50	1.24
7387--7423	17	2.1	18	90	5	58	56	8	0	35	1.29
7918--7958	22	1.9	21	85	5	55	68	14	0	17	1.22
7918--7958	21	2.0	21	85	9	57	68	14	0	17	1.22
9495--9581	3	26.7	3	80	13	75	36	2	1	59	1.17
9487--9585	7	14.3	7	74	16	73	35	2	2	60	1.20
9495--9585	10	9.2	10	77	11	82	36	2	1	60	1.16
9497--9581	13	6.7	13	76	13	88	37	2	1	58	1.18
9495--9581	16	5.3	16	76	13	88	36	2	1	59	1.17
9520--9568	19	2.5	19	86	3	62	36	2	2	59	1.21
11484--11552	29	2.4	28	85	11	86	57	4	1	36	1.27
16882--16952	34	2.1	34	100	0	142	52	5	11	30	1.60
17360--17414	22	2.5	23	85	11	71	60	3	0	36	1.15
19142--19192	22	2.4	20	84	12	66	43	1	0	54	1.11
23510--23535	2	13.0	2	100	0	52	50	0	50	0	1.00
36104--36285	78	2.3	79	88	5	280	43	18	10	26	1.82
37968--38026	10	5.7	10	73	15	57	57	20	11	10	1.63
37972--38020	16	3.1	16	93	0	89	57	22	12	8	1.61
38748--38822	24	3.1	24	84	3	80	54	21	10	13	1.68
38771--38823	14	4.1	14	74	18	51	50	26	13	9	1.71
46943--46970	14	2.0	14	100	0	56	42	0	28	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50112--50162	25	2.0	25	85	7	68	1	21	9	66	1.31
50585--50688	3	34.3	3	92	1	172	62	0	1	35	1.06
50832--51650	112	7.3	113	90	6	1113	29	19	14	36	1.91
50832--51673	226	3.8	223	87	6	1115	30	19	14	36	1.91
51368--51425	17	3.2	17	69	21	55	18	24	8	48	1.76
52318--53117	165	4.9	165	91	3	1256	36	22	13	27	1.92
52318--53117	83	9.7	83	91	3	1235	36	22	13	27	1.92
53826--53868	16	2.7	15	82	13	50	55	9	6	27	1.57
66629--66664	11	3.2	11	92	4	54	38	0	0	61	0.96
66660--66738	3	26.3	3	100	0	158	65	0	0	34	0.93
76674--76704	2	15.5	2	93	0	53	0	51	0	48	1.00
80653--81751	105	10.4	105	94	0	1829	32	25	18	22	1.97
80647--81751	316	3.5	316	93	0	1847	32	25	18	23	1.97
80649--81751	421	2.6	421	94	0	1938	32	25	18	23	1.97
81950--82110	81	2.0	80	80	1	178	28	24	22	24	1.99
82135--82203	21	3.6	21	70	22	69	26	27	14	31	1.95
82132--82253	36	3.4	36	88	3	174	24	23	16	35	1.95
82258--82507	84	3.0	84	87	1	331	30	24	20	24	1.99
85217--85591	154	2.4	153	83	5	445	40	10	16	33	1.81
86102--86141	20	2.0	21	85	5	55	37	10	7	45	1.66
86040--86203	71	2.3	73	87	2	224	46	9	9	35	1.68
86610--86667	3	19.3	3	96	0	107	32	1	0	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86570--86621	24	2.2	24	93	3	88	34	7	1	55	1.39
97418--97476	2	29.5	2	100	0	118	50	0	0	49	1.00
97672--97736	29	2.2	29	80	0	76	32	1	12	53	1.47
98316--98365	19	2.6	18	84	15	57	66	2	26	6	1.26
101223--102845	237	7.1	225	77	10	1371	26	33	14	24	1.94
101351--102610	666	1.9	670	86	2	1812	26	33	15	24	1.95
107202--107372	30	5.7	30	94	0	279	38	12	20	29	1.89
114701--114730	14	2.1	14	100	0	60	6	16	30	46	1.73
114702--114752	24	2.1	24	85	0	66	11	13	21	52	1.72
115827--115866	10	4.4	10	76	23	52	7	12	22	57	1.60
115833--115865	16	2.1	16	100	0	66	6	12	24	57	1.57
120182--120233	3	17.3	3	76	7	52	30	3	3	61	1.32
122582--122625	22	2.0	22	81	0	52	27	4	15	52	1.63
124122--124183	32	2.0	32	96	3	117	14	14	9	61	1.57
125158--125202	22	2.0	23	83	12	58	37	28	13	20	1.90
126215--126269	24	2.5	21	85	8	65	74	10	10	3	1.19
126236--126282	12	3.9	12	86	8	60	72	12	10	4	1.25
126227--126283	23	2.3	25	73	11	64	70	12	14	3	1.30
127450--127515	4	17.2	4	81	9	84	53	21	0	25	1.46
127966--128200	104	2.3	104	79	9	236	30	18	12	38	1.88
128164--128265	34	3.0	36	78	7	106	33	19	11	35	1.88
128609--128678	28	2.5	28	81	6	88	31	10	14	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128688--128790	52	2.0	54	88	5	158	33	13	16	35	1.88
128777--128972	66	3.0	67	84	7	224	29	12	11	46	1.77
128830--128930	30	3.2	30	69	24	80	29	12	9	47	1.74
128740--128972	66	3.6	66	78	12	182	29	12	12	45	1.79

Tables:   1

The End!