genome.fa.s3615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003615.1 Hibiscus syriacus cultivar Beakdansim tig00007644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68510

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9394--9436	22	1.9	23	90	4	70	30	0	13	55	1.39
10314--10366	22	2.5	22	82	14	58	30	0	1	67	1.01
10838--10880	11	3.9	11	84	0	59	11	9	16	62	1.53
17215--17348	20	6.7	20	80	6	155	29	25	21	23	1.99
17215--17348	60	2.2	60	84	5	182	29	25	21	23	1.99
17523--17565	22	2.0	22	90	0	68	25	41	13	18	1.88
17953--18005	20	2.7	20	85	2	72	13	15	20	50	1.76
19973--20019	20	2.5	19	89	6	69	14	19	27	38	1.91
20510--20563	21	2.6	21	100	0	108	25	29	20	24	1.99
22041--22102	14	4.3	14	77	6	61	38	0	14	46	1.45
22201--22254	20	2.7	20	79	0	54	46	25	14	12	1.81
22253--22533	20	14.4	20	83	6	335	28	19	20	30	1.97
22504--22773	140	1.9	140	97	0	513	42	15	12	29	1.84
24876--24912	14	2.6	14	91	4	56	5	21	21	51	1.68
25102--25155	24	2.2	24	90	0	81	42	20	12	24	1.87
25977--26034	20	2.9	20	92	0	89	27	20	25	25	1.99
25978--26044	20	3.4	19	85	8	80	28	19	23	28	1.98
47257--47288	15	2.1	15	100	0	64	25	31	0	43	1.55
47497--47780	41	7.0	41	84	0	318	31	16	23	27	1.97
47498--47780	122	2.3	123	82	5	349	31	16	24	27	1.97
47727--47923	82	2.4	82	87	1	279	34	19	18	26	1.96
47482--47961	41	11.7	41	79	3	222	33	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47727--47974	82	3.0	82	81	4	277	35	19	16	28	1.93
53796--53829	14	2.4	14	90	0	50	64	0	14	20	1.28
54663--54747	32	2.7	30	71	20	75	27	29	29	14	1.95
56305--56343	2	20.0	2	94	5	71	51	0	0	48	1.00
60160--60201	21	2.0	21	100	0	84	38	19	9	33	1.84
62127--62171	19	2.4	19	88	0	63	35	2	13	48	1.54
65549--65603	24	2.1	26	83	12	69	54	1	3	40	1.28
65713--65770	30	1.9	31	96	3	109	24	24	17	34	1.96
66105--66159	22	2.5	22	82	2	58	54	1	5	38	1.34
67992--68079	34	2.6	34	89	3	135	23	22	29	23	1.99

Tables:   1

The End!