genome.fa.s3618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003618.1 Hibiscus syriacus cultivar Beakdansim tig00007651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103197

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955--1004	2	26.5	2	88	11	79	50	0	0	50	1.00
955--1003	13	3.9	13	92	7	84	51	0	0	48	1.00
955--1004	15	3.5	15	91	5	77	50	0	0	50	1.00
9957--9992	18	1.9	19	88	5	56	55	8	0	36	1.30
10097--10131	18	1.9	18	88	0	52	54	2	11	31	1.51
18237--18301	3	21.7	3	77	12	62	35	3	3	58	1.29
21616--21696	29	2.8	29	83	9	94	45	11	3	39	1.57
21645--21718	29	2.6	28	87	6	105	39	14	2	43	1.60
21645--21718	28	2.6	29	87	6	107	39	14	2	43	1.60
21711--21780	29	2.4	29	81	6	79	40	18	5	35	1.75
22421--22462	21	2.0	21	90	0	66	26	2	7	64	1.32
28542--28611	29	2.3	31	87	4	99	41	14	1	42	1.54
29472--29564	21	4.5	21	78	4	100	39	18	24	17	1.91
29472--29564	41	2.3	41	100	0	186	39	18	24	17	1.91
29491--29625	41	3.3	41	82	6	132	38	20	21	19	1.94
29553--29647	20	4.7	20	77	2	73	34	24	16	24	1.95
29833--29876	22	2.0	22	95	0	79	20	45	15	18	1.85
30140--30177	20	1.9	20	88	0	58	13	15	21	50	1.78
31496--31540	18	2.5	18	88	0	72	26	44	15	13	1.83
32009--32075	20	3.4	20	81	2	73	38	23	22	14	1.92
32064--32121	14	3.9	14	79	16	71	48	24	17	10	1.78
32048--32138	32	2.8	33	94	3	166	47	21	18	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32169--32256	19	4.6	19	81	4	97	14	22	21	40	1.90
34271--34390	19	6.8	19	83	16	161	45	17	22	14	1.84
34242--34390	33	4.4	33	83	8	190	43	19	22	14	1.87
34409--34466	20	2.9	20	94	0	98	17	22	22	37	1.93
35524--35577	24	2.2	24	90	0	81	24	16	20	38	1.92
38050--38180	19	7.7	19	64	23	85	41	20	20	16	1.90
38051--38183	33	4.0	33	94	1	214	40	20	20	18	1.92
38176--38218	20	2.2	20	87	4	61	16	18	23	41	1.89
38359--38409	14	3.6	14	89	0	75	45	23	0	31	1.53
41721--41899	19	9.8	19	74	13	126	45	21	21	11	1.83
41746--41831	33	2.6	33	92	1	136	38	25	24	11	1.89
41816--41904	19	4.7	19	94	0	151	48	21	19	11	1.79
41900--41980	19	4.5	19	74	16	73	11	17	24	46	1.80
42533--42633	20	4.9	21	71	12	59	18	19	18	42	1.89
42496--42589	20	4.7	20	80	2	89	23	18	24	34	1.96
42517--42651	41	3.3	41	82	4	139	19	21	20	38	1.94
42578--42670	20	4.6	20	78	4	96	17	24	18	39	1.91
42578--42670	41	2.3	41	100	0	186	17	24	18	39	1.91
42933--42990	21	2.6	22	83	8	73	32	1	5	60	1.29
53126--53227	35	2.8	36	91	5	161	31	5	17	45	1.72
56496--56528	17	1.9	17	100	0	66	18	18	36	27	1.94
56386--56544	64	2.5	64	87	5	200	25	20	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56497--56541	17	2.6	17	89	3	63	22	17	31	28	1.97
62270--62309	21	1.9	21	85	10	55	35	10	2	52	1.48
64242--64290	19	2.7	17	84	9	53	26	20	28	24	1.99
65366--65584	43	5.1	43	90	0	294	27	21	22	28	1.99
65409--65634	86	2.6	86	85	4	278	27	21	22	27	1.99
65388--65640	43	5.9	43	86	1	168	28	20	22	28	1.99
65787--65827	21	2.0	21	90	0	64	53	24	2	19	1.57
66715--66830	36	3.2	36	96	0	205	37	17	12	31	1.88
69842--70225	41	9.4	41	83	3	461	34	20	18	26	1.96
69825--70225	165	2.4	165	84	5	517	34	20	18	25	1.96
72096--72197	35	2.8	36	92	5	170	30	5	18	45	1.73
75474--75506	17	1.9	17	93	0	57	15	18	39	27	1.90
75475--75519	17	2.6	17	85	3	54	20	17	33	28	1.95
75364--75522	64	2.5	64	84	5	182	25	19	25	30	1.98
81248--81287	21	1.9	21	85	10	55	35	10	2	52	1.48
83220--83268	19	2.7	17	84	9	53	26	20	28	24	1.99
87226--87260	6	5.8	6	96	0	61	2	51	11	34	1.53
96784--96828	21	2.1	21	87	0	63	31	28	24	15	1.96
98248--98453	30	6.8	31	94	0	197	23	22	23	30	1.99
98284--98473	30	6.3	30	96	1	337	22	23	24	30	1.99
99620--99672	24	2.2	24	100	0	106	30	33	24	11	1.90
102986--103036	23	2.2	24	82	10	61	35	1	7	54	1.40

Tables:   1

The End!