genome.fa.s3619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003619.1 Hibiscus syriacus cultivar Beakdansim tig00007657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132422

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10365--10396	16	2.0	16	100	0	64	25	12	12	50	1.75
29231--29275	2	22.5	2	100	0	90	48	0	0	51	1.00
29645--29696	22	2.3	24	75	24	60	23	0	11	65	1.25
30084--30121	20	1.9	20	88	0	58	52	2	0	44	1.14
30083--30127	20	2.2	20	80	0	54	55	4	0	40	1.20
31912--31964	23	2.2	24	86	3	72	52	1	3	41	1.30
34444--34525	31	2.7	30	88	3	128	48	0	1	50	1.08
34447--34508	11	5.8	11	76	14	67	48	0	0	51	1.00
34462--34512	8	6.5	8	79	20	63	50	0	0	49	1.00
34620--34653	18	1.9	18	94	5	61	52	5	11	29	1.61
43531--43572	22	1.9	22	95	0	75	38	7	9	45	1.64
46161--46244	24	3.5	24	87	6	125	65	7	5	21	1.39
46188--46234	14	3.4	14	85	5	60	65	6	4	23	1.33
46171--46245	10	7.7	10	77	14	52	65	8	5	21	1.39
46161--46257	48	2.0	49	91	2	160	63	8	6	21	1.44
46972--47046	3	25.0	3	94	5	134	34	0	0	65	0.93
46979--47055	18	4.2	19	82	8	70	38	0	0	61	0.96
46972--47067	30	3.3	30	87	7	85	40	0	0	59	0.97
48335--48381	20	2.3	21	78	10	62	25	2	8	63	1.34
49048--49076	15	1.9	15	100	0	58	10	6	13	68	1.37
55660--55846	96	1.9	96	89	0	284	25	37	13	23	1.91
57290--57330	16	2.5	17	84	7	59	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57943--57999	16	3.6	16	95	0	105	40	12	15	31	1.85
58007--58038	15	2.1	15	94	0	55	28	12	18	40	1.87
58106--58135	15	2.0	15	93	0	51	43	26	6	23	1.78
58263--58300	2	19.0	2	100	0	76	50	0	0	50	1.00
59215--59499	141	2.0	141	81	9	332	29	11	18	40	1.87
63577--63614	19	2.0	19	94	0	67	26	18	39	15	1.91
71614--71686	30	2.4	30	93	0	119	31	24	19	24	1.98
73018--73057	3	13.0	3	94	5	71	67	0	32	0	0.91
74373--74615	38	6.5	37	75	13	162	43	4	7	44	1.52
74387--74666	39	7.6	37	75	13	213	43	4	8	44	1.53
74548--74572	11	2.3	11	100	0	50	40	8	8	44	1.63
74420--74666	36	6.6	37	74	16	199	43	4	8	43	1.56
74419--74666	72	3.3	72	81	9	250	43	4	8	43	1.56
74442--74639	35	5.5	34	72	14	139	43	5	9	42	1.58
74728--74766	3	12.3	3	94	5	60	30	0	0	69	0.89
79811--80878	169	6.4	169	88	3	1497	30	25	19	25	1.98
79811--80992	83	14.2	83	80	6	1138	30	24	19	25	1.98
79789--80992	501	2.4	502	97	0	2232	29	24	19	25	1.99
81687--81864	36	4.9	36	76	14	134	45	3	6	44	1.47
81785--81809	12	2.1	12	100	0	50	40	8	8	44	1.63
81696--81938	35	6.6	36	77	11	192	43	4	8	43	1.57
81998--82029	3	10.3	3	93	6	55	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81998--82030	16	2.1	16	100	0	66	30	0	0	69	0.88
84075--84115	17	2.4	18	84	12	59	51	0	0	48	1.00
84075--84108	13	2.5	14	85	4	52	52	0	0	47	1.00
87668--87741	20	3.7	20	80	3	94	40	18	22	17	1.91
87685--87755	21	3.4	21	80	3	99	42	18	23	15	1.88
87668--87756	41	2.2	41	100	0	178	40	17	23	17	1.91
87746--87823	41	1.9	41	84	5	104	42	21	14	21	1.88
87791--87842	20	2.6	20	93	0	86	26	28	19	25	1.98
88405--88584	19	9.8	19	75	14	164	11	21	22	45	1.84
88405--88584	33	4.9	38	78	12	164	11	21	22	45	1.84
88527--88584	20	2.9	20	80	10	64	13	24	18	43	1.87
90587--90708	42	2.9	42	80	2	120	22	36	18	22	1.95
90642--90711	21	3.3	21	66	7	61	22	37	20	20	1.95
92264--92414	19	8.7	19	63	21	71	15	22	19	41	1.90
92268--92394	33	3.9	32	85	8	184	15	22	18	42	1.89
92261--92393	66	2.0	66	95	0	239	17	22	18	41	1.90
95969--96026	20	2.9	20	94	0	98	37	22	22	17	1.93
96068--96112	19	2.4	19	92	0	72	17	15	15	51	1.77
98190--98247	14	3.9	14	79	16	71	48	25	17	8	1.75
98174--98264	32	2.8	33	94	3	166	47	23	18	10	1.80
98116--98269	19	8.6	19	73	17	114	42	24	20	12	1.87
98281--98338	14	3.9	14	79	16	71	8	17	25	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98276--98354	32	2.4	33	93	2	133	10	17	24	48	1.78
98348--98393	20	2.3	20	88	0	65	15	21	26	36	1.93
98866--98910	18	2.5	18	88	0	72	13	15	44	26	1.83
100230--100267	20	1.9	20	88	0	58	50	21	15	13	1.78
100531--100574	22	2.0	22	91	8	72	18	13	45	22	1.84
100742--100879	61	2.3	61	84	0	186	23	16	23	36	1.94
100742--100876	20	6.7	20	80	4	119	23	17	23	35	1.95
100865--100957	20	4.5	21	78	4	100	17	24	18	39	1.91
100865--100957	41	2.3	41	100	0	150	17	24	18	39	1.91
100742--100897	61	2.6	61	81	2	161	22	18	23	35	1.95
110271--110345	29	2.6	29	82	0	87	42	10	20	26	1.84
114067--114357	150	1.9	150	82	1	359	35	16	20	27	1.94
114759--114825	32	2.1	32	100	0	134	29	10	20	38	1.86
121463--121512	23	2.1	23	85	10	66	54	2	6	38	1.37
122280--122337	21	2.8	21	84	2	82	46	15	20	17	1.84
122700--122785	20	4.2	20	94	2	154	18	18	16	46	1.84
122700--122785	41	2.1	40	95	2	154	18	18	16	46	1.84
122802--122848	20	2.3	20	96	0	85	14	12	27	44	1.82
122842--122909	20	3.3	20	71	4	64	25	17	25	32	1.97
122898--122950	20	2.6	21	77	17	67	24	13	33	28	1.93

Tables:   1

The End!