genome.fa.s362.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000362.1 Hibiscus syriacus cultivar Beakdansim tig00000660_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117496

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153--424	143	1.9	141	93	5	476	34	19	15	29	1.93
1663--1823	64	2.5	61	84	10	189	26	21	17	34	1.96
5039--5083	23	2.0	23	90	0	72	24	26	26	22	2.00
5051--5363	149	2.1	147	93	2	538	34	20	16	27	1.95
6597--6756	64	2.5	63	79	6	171	28	21	15	35	1.94
16623--16662	11	3.8	11	87	12	66	20	15	25	40	1.90
16618--16666	20	2.5	20	100	0	98	20	14	24	40	1.89
16607--16666	9	6.4	9	78	21	70	23	13	23	40	1.90
16693--17078	183	2.1	183	91	2	625	45	8	3	42	1.52
17400--17430	2	15.5	2	100	0	62	48	0	0	51	1.00
17901--17944	23	1.9	23	95	0	79	59	13	9	18	1.60
24855--24889	18	1.9	18	94	0	61	25	20	22	31	1.98
26399--26731	111	3.0	111	97	0	621	45	10	7	36	1.68
26793--26828	17	2.1	18	94	5	65	63	2	5	27	1.30
26874--26904	10	3.1	10	95	0	53	35	0	29	35	1.58
27023--27148	50	2.5	50	81	0	153	25	29	30	15	1.95
36865--36977	60	1.9	60	88	3	174	40	19	11	28	1.86
40763--40832	29	2.4	29	100	0	140	24	31	27	17	1.97
43152--43197	20	2.2	21	84	3	58	63	15	2	19	1.41
46349--46462	57	2.0	57	96	0	210	32	14	24	28	1.94
49328--49354	2	13.5	2	100	0	54	51	0	0	48	1.00
50146--50259	35	3.3	35	83	0	138	42	19	0	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50253--50327	35	2.1	35	82	4	89	34	0	21	44	1.53
52294--52359	25	2.6	25	79	9	80	59	0	3	37	1.13
55908--55934	10	2.7	10	100	0	54	29	18	29	22	1.97
57213--57238	13	2.0	13	100	0	52	46	15	23	15	1.83
58247--58282	16	2.2	17	90	5	56	52	0	0	47	1.00
61756--61833	31	2.5	31	93	0	129	29	16	2	51	1.58
62608--62639	4	8.0	4	100	0	64	25	0	25	50	1.50
63331--63373	20	2.3	19	84	11	61	25	30	4	39	1.76
63336--63373	20	1.9	20	94	0	67	26	28	5	39	1.78
63691--63721	3	10.3	3	100	0	62	32	0	0	67	0.91
65735--65807	38	1.9	38	94	0	128	34	21	19	24	1.96
68155--68238	41	2.0	42	90	2	134	11	14	33	40	1.82
68348--68427	35	2.3	35	88	0	124	28	7	26	37	1.83
71105--71186	11	7.3	11	73	20	62	35	3	1	59	1.23
71591--71639	27	1.9	26	84	12	66	32	10	0	57	1.32
74729--74781	11	4.9	10	74	17	52	79	5	15	0	0.91
74729--74781	22	2.4	22	85	14	74	79	5	15	0	0.91
74729--74787	22	2.7	23	82	10	72	77	6	15	0	0.96
75402--75448	21	2.2	22	92	3	78	34	29	10	25	1.90
76308--76410	36	2.9	36	92	1	163	25	23	14	36	1.93
76527--76613	37	2.4	37	86	1	113	25	21	13	39	1.90
76646--76719	35	2.1	37	87	5	107	27	20	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76326--76776	102	4.5	101	92	2	732	29	20	13	36	1.91
76725--76832	56	1.9	56	94	0	189	25	21	12	40	1.88
76326--76789	200	2.3	201	89	4	672	29	20	12	37	1.90
76940--77010	37	1.9	37	82	0	88	26	22	11	39	1.88
77331--77959	109	5.9	107	83	7	619	32	25	20	21	1.97
78945--78983	15	2.5	15	79	4	51	35	2	0	61	1.10
79385--79430	24	2.0	23	84	12	60	32	13	0	54	1.39
80853--80970	61	2.0	61	83	8	152	47	5	11	36	1.61
88096--88146	19	2.6	20	90	3	77	43	23	17	15	1.88
88096--88307	20	10.6	20	79	8	119	39	21	21	17	1.93
88200--88307	40	2.7	40	94	0	180	34	21	25	19	1.96
88395--88511	6	19.5	6	100	0	234	33	50	16	0	1.45
89195--89232	6	6.5	6	96	3	69	0	15	52	31	1.43
89310--89353	20	2.2	20	91	0	70	11	18	15	54	1.70
89340--89616	20	13.6	20	78	8	157	18	21	19	40	1.91
89350--89493	43	3.4	43	89	3	222	21	24	16	37	1.93
89547--89616	19	3.6	19	96	1	122	14	17	24	44	1.85
89745--89805	31	2.0	31	93	0	104	19	11	18	50	1.76
95270--95538	136	2.0	137	92	0	450	27	23	20	27	1.99
97310--97369	20	3.1	18	77	13	57	48	1	1	48	1.21
98698--98785	3	29.3	3	92	0	149	62	0	3	34	1.12
99110--99668	113	5.0	113	95	0	949	29	18	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100428--100967	82	6.6	82	94	1	956	35	22	13	28	1.92
102110--102155	20	2.4	19	86	13	67	0	19	0	80	0.71
109411--109443	15	2.3	15	89	5	50	48	3	0	48	1.17
113525--113565	20	2.0	21	85	4	57	53	2	2	41	1.27
114949--115027	3	26.3	3	92	0	122	60	0	5	34	1.18

Tables:   1

The End!