Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003620.1 Hibiscus syriacus cultivar Beakdansim tig00007658_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  323556

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
214272--214347
3
24.7
3
86
5
107
63
1
0
35
1.03
217031--217193
87
1.9
87
92
0
272
42
9
14
34
1.77
220815--221376
184
3.1
183
95
0
982
33
16
12
37
1.87
222755--222794
12
3.3
12
85
0
53
20
32
7
40
1.80
224261--225235
200
4.9
200
93
3
1625
31
17
14
36
1.90
224261--225235
389
2.5
393
92
2
1611
31
17
14
36
1.90
225465--225513
19
2.6
19
96
0
89
55
10
2
32
1.45
227736--227782
20
2.4
19
79
10
58
19
19
10
51
1.75
227522--227995
181
2.6
182
93
1
781
26
17
13
41
1.87
229412--229608
105
1.9
105
94
0
349
18
14
15
52
1.75
238439--238482
2
22.0
2
100
0
88
50
0
0
50
1.00
244869--244906
18
2.0
20
90
10
62
36
10
10
42
1.74
261653--261730
35
2.2
34
84
6
102
42
14
0
43
1.45
261725--261799
35
2.1
35
90
0
114
37
0
18
44
1.50
267650--267687
20
1.9
20
94
0
67
44
10
23
21
1.83
267652--267693
20
2.2
19
83
8
50
50
9
19
21
1.75
267718--267798
35
2.3
35
97
0
153
24
4
30
39
1.77
267882--267912
15
2.1
15
100
0
62
51
0
0
48
1.00
269934--270040
24
4.5
24
81
6
119
46
17
17
17
1.84
269920--270040
36
3.4
35
75
11
111
48
17
16
17
1.81
269922--270026
12
8.8
12
70
12
72
49
18
15
17
1.80
273708--273796
18
4.7
18
84
10
115
28
31
22
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
274350--274504
64
2.4
64
81
9
165
26
20
19
33
1.96
275185--275222
2
19.0
2
100
0
76
50
0
0
50
1.00
281275--281436
64
2.5
63
84
8
186
26
20
19
33
1.97
282378--282417
2
20.0
2
100
0
80
50
0
0
50
1.00
289896--289937
21
2.0
21
86
4
59
38
4
0
57
1.20
292356--292408
27
1.9
28
88
11
83
56
0
1
41
1.10
299316--299380
31
2.1
31
83
11
80
29
0
4
66
1.12
300218--300273
26
2.2
26
96
0
103
67
5
0
26
1.11
304380--304556
41
4.2
40
66
12
106
34
19
20
25
1.96
304329--304551
84
2.7
83
84
1
284
34
20
21
24
1.97
304273--304595
83
3.9
83
76
7
251
33
19
21
26
1.97
305270--305309
21
1.9
21
100
0
80
32
15
15
37
1.88
306535--306560
12
2.2
12
100
0
52
26
42
0
30
1.56
309511--309587
21
3.7
21
82
0
91
40
19
38
1
1.60
309514--309611
21
4.6
21
77
8
90
40
19
37
2
1.63
309950--310180
43
5.3
43
72
13
145
31
21
19
26
1.98
310036--310218
43
4.3
43
73
16
130
25
22
20
31
1.98

Tables:   1   2

The End!