Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003621.1 Hibiscus syriacus cultivar Beakdansim tig00007659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55728

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--598
153
3.9
155
88
4
849
22
28
15
34
1.94
642--891
117
2.2
117
90
1
396
23
25
20
31
1.98
12097--12154
28
2.1
29
80
9
75
37
6
10
44
1.65
13105--13175
26
2.8
25
82
4
97
42
12
26
18
1.86
17702--17734
2
16.5
2
100
0
66
48
0
0
51
1.00
18903--18992
29
3.1
29
82
7
94
40
5
13
41
1.68
18903--18997
28
3.3
28
81
10
102
38
6
12
42
1.68
19079--19160
29
2.8
29
79
1
83
41
6
8
43
1.60
21174--21218
21
2.1
21
92
8
74
37
0
0
62
0.96
21853--22001
59
2.5
58
77
7
158
44
4
16
35
1.66
26063--26142
39
2.1
38
86
9
110
52
8
13
25
1.69
35453--35482
15
2.0
15
93
0
51
30
26
6
36
1.82
37619--37646
14
2.0
14
100
0
56
50
0
0
50
1.00
38422--38476
18
2.9
18
79
17
58
45
10
3
40
1.57
42990--43048
15
3.9
15
79
16
61
57
0
6
35
1.25
45195--45230
2
18.0
2
88
11
56
50
2
0
47
1.15
47452--47484
13
2.3
15
90
10
52
33
0
18
48
1.48
48846--48910
33
1.9
34
93
3
114
23
16
24
35
1.95
49719--49749
14
2.2
14
94
0
53
58
25
12
3
1.50
49712--49773
24
2.6
24
92
2
99
59
22
11
6
1.54
49733--49795
32
1.9
33
83
3
83
65
23
6
4
1.36
54212--54268
29
2.0
29
86
6
80
28
21
7
43
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54252--54488
116
2.0
116
86
3
325
27
14
5
52
1.63
55246--55328
2
42.0
2
92
2
141
49
1
1
48
1.16

Tables:   1

The End!