genome.fa.s3622.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003622.1 Hibiscus syriacus cultivar Beakdansim tig00007662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104815

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79--120	16	2.7	16	81	3	50	45	7	16	30	1.74
3084--3280	6	31.5	6	71	22	122	41	16	26	15	1.88
3084--3320	13	19.0	13	87	8	298	42	15	26	15	1.87
3084--3324	62	3.9	64	86	8	295	41	15	26	15	1.87
3100--3336	75	3.1	75	86	9	265	41	15	27	15	1.87
3317--3374	6	9.7	6	92	0	98	31	18	32	17	1.94
9932--9976	21	2.2	20	84	11	56	37	8	4	48	1.55
19997--20029	14	2.4	14	94	0	57	15	42	27	15	1.86
19971--20024	23	2.3	23	87	0	81	14	37	27	20	1.92
21582--21644	23	2.7	23	90	0	99	25	20	17	36	1.94
23966--24033	31	2.2	31	86	5	93	30	7	7	54	1.55
27792--27834	19	2.5	16	78	14	50	34	0	0	65	0.93
28554--28579	13	2.0	13	100	0	52	61	7	7	23	1.49
33018--33110	23	4.0	23	92	0	141	15	26	24	33	1.95
33018--33147	46	2.8	46	83	5	122	16	27	23	33	1.95
33018--33147	23	5.7	23	83	3	102	16	27	23	33	1.95
34071--34106	2	18.0	2	100	0	72	50	0	0	50	1.00
42669--42694	7	3.7	7	100	0	52	15	15	26	42	1.87
45969--45994	13	2.0	13	100	0	52	38	23	7	30	1.83
49713--49851	70	2.0	71	88	1	208	43	9	14	33	1.77
50020--50100	38	2.2	37	82	8	96	45	2	2	49	1.28
50379--50579	60	3.3	60	73	15	198	40	14	4	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50447--50471	2	12.5	2	100	0	50	48	0	0	52	1.00
50351--50579	60	3.8	61	72	12	195	40	13	4	41	1.64
50351--50568	121	1.8	121	97	0	418	40	12	4	42	1.64
56076--56108	10	3.3	10	95	0	57	48	15	33	3	1.60
56608--56634	14	1.9	14	100	0	54	40	0	7	51	1.30
59546--59594	22	2.3	22	86	10	66	75	2	0	22	0.90
60870--60944	24	3.3	24	67	17	79	44	2	6	46	1.43
60851--60952	43	2.4	43	91	1	170	45	1	4	48	1.35
63599--63772	21	8.4	21	73	13	105	23	19	19	37	1.94
63597--63689	42	2.2	42	92	0	150	23	19	20	36	1.95
63620--63771	63	2.4	63	85	2	218	24	19	18	38	1.93
63673--63776	42	2.5	40	90	6	172	25	20	15	39	1.91
64132--65118	333	3.0	333	92	4	1700	41	14	13	30	1.84
68082--68138	10	5.4	10	74	12	51	26	26	40	7	1.81
68068--68142	33	2.3	33	95	0	132	25	28	38	8	1.84
68144--68212	29	2.3	30	87	5	113	17	28	36	17	1.93
68269--68340	10	6.9	10	72	9	54	11	33	30	25	1.90
68234--68325	33	2.8	32	83	6	105	9	34	27	28	1.88
68269--68353	20	4.1	20	79	8	89	10	31	30	27	1.90
68312--68349	10	3.8	10	83	13	51	10	26	34	28	1.90
68421--68493	29	2.5	30	90	4	121	13	27	38	20	1.90
77501--77527	7	3.9	7	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78718--78775	26	2.2	26	81	6	64	50	24	17	8	1.74
79137--79174	18	2.1	18	90	0	58	52	0	0	47	1.00
80388--80503	42	2.8	42	97	0	214	16	19	18	44	1.86
80692--80750	19	3.0	20	82	5	66	45	0	0	54	0.99
80703--80775	29	2.5	29	82	14	89	46	1	0	52	1.09
80718--80814	51	1.9	49	82	12	117	48	1	1	49	1.14
80763--80862	28	3.5	28	76	14	89	47	1	1	51	1.14
81029--81098	20	3.5	20	90	0	104	37	10	8	44	1.69
84528--84568	18	2.3	18	86	0	55	34	0	4	60	1.18
91410--91515	39	2.7	39	75	13	101	35	16	3	44	1.65
91462--91823	193	1.9	193	94	0	634	36	7	3	53	1.45
91838--91883	24	1.9	25	86	8	69	39	6	2	52	1.40
91828--91884	21	2.5	22	76	18	71	40	7	1	50	1.40
97415--97807	131	3.0	130	93	1	680	33	23	18	24	1.96

Tables:   1

The End!