Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003623.1 Hibiscus syriacus cultivar Beakdansim tig00007664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113888

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
502--663
64
2.5
64
80
6
161
31
21
20
26
1.98
10749--10782
18
1.9
18
88
5
52
20
14
5
58
1.57
24291--24538
85
3.0
79
88
5
352
39
6
6
46
1.56
24291--24538
80
3.0
82
87
5
367
39
6
6
46
1.56
33340--33378
14
2.7
15
80
8
53
46
5
0
48
1.24
35149--35197
23
2.1
23
85
7
64
69
2
0
28
1.00
43371--43440
36
1.9
37
85
8
99
47
4
0
48
1.21
43421--43528
26
4.1
26
71
21
82
47
1
0
50
1.11
43426--43471
22
2.1
22
91
0
74
43
2
0
54
1.12
43379--43464
36
2.4
36
78
12
90
45
3
0
51
1.18
43407--43534
53
2.5
51
82
9
145
48
1
0
50
1.10
43638--43682
23
2.0
23
86
0
63
53
2
2
42
1.25
43785--43835
27
1.9
27
84
11
70
54
0
0
45
0.99
44042--44111
15
4.9
15
70
13
58
34
12
5
47
1.66
44027--44111
29
3.0
29
92
1
136
32
14
5
47
1.68
44029--44116
14
6.1
14
71
15
63
35
14
5
44
1.69
49276--49308
14
2.3
15
94
5
59
84
9
6
0
0.76
50825--51033
75
2.8
75
85
2
258
23
31
23
21
1.99
63859--63958
31
3.2
30
71
10
85
38
10
7
45
1.65
83842--83866
2
12.5
2
100
0
50
52
0
0
48
1.00
85279--85388
36
3.2
36
82
10
106
41
6
6
45
1.55
90898--91025
59
2.2
60
81
7
145
35
18
13
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91851--91916
29
2.2
30
81
10
73
33
10
3
53
1.51
103526--103593
29
2.3
29
100
0
136
50
19
2
27
1.62
104860--104932
29
2.5
29
97
2
137
24
16
10
47
1.78
105546--105608
26
2.5
26
86
2
92
22
7
17
52
1.70
109901--109932
12
2.6
13
85
14
50
28
12
9
50
1.71

Tables:   1

The End!