Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003624.1 Hibiscus syriacus cultivar Beakdansim tig00007665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85071

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148--1248
36
2.8
37
86
6
134
30
15
14
38
1.88
1302--1771
171
2.7
174
91
5
736
46
8
3
41
1.51
3929--3971
20
2.3
19
84
11
61
23
27
9
39
1.85
3934--3971
20
1.9
20
94
0
67
23
26
10
39
1.87
7409--7470
31
2.0
32
87
3
90
43
6
1
48
1.38
21972--21999
2
14.0
2
100
0
56
50
0
0
50
1.00
33443--33494
22
2.3
23
80
6
61
28
19
17
34
1.94
34023--34065
21
2.0
21
81
0
50
20
23
27
27
1.99
37614--37654
2
20.5
2
100
0
82
51
0
0
48
1.00
37704--37742
19
2.1
19
90
4
62
48
2
0
48
1.15
40474--40531
28
2.0
29
83
9
75
72
1
5
20
1.13
40626--40665
13
3.1
13
88
0
62
77
0
0
22
0.77
40745--40774
13
2.2
14
94
5
53
76
0
0
23
0.78
42079--42104
13
2.0
13
100
0
52
76
7
0
15
0.99
42163--42262
33
3.0
33
76
12
89
46
3
3
48
1.33
42198--42413
36
6.0
35
75
15
167
43
2
5
48
1.39
42196--42414
72
3.0
70
78
15
198
44
2
5
47
1.39
42230--42414
37
4.9
37
79
11
164
44
3
5
47
1.42
42220--42414
36
5.2
37
79
13
168
44
3
5
47
1.40
43071--43718
84
7.9
83
81
5
685
23
21
26
29
1.99
43026--43718
165
4.2
164
87
4
833
23
21
25
29
1.99
43096--43718
249
2.5
248
87
2
813
23
21
26
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46829--46872
17
2.4
19
88
7
65
68
9
11
11
1.40
47547--47577
16
2.0
16
93
6
55
74
6
12
6
1.21
48741--48796
24
2.1
27
84
12
73
69
1
5
23
1.18
48856--48885
13
2.2
14
94
5
53
76
0
0
23
0.78
50189--50214
13
2.0
13
100
0
52
76
7
0
15
0.99
50269--50376
35
3.2
33
79
16
105
49
2
2
45
1.31
50269--50376
34
3.2
34
80
11
123
49
2
2
45
1.31
50307--50527
70
3.0
73
78
15
192
45
2
4
47
1.39
50244--50473
111
2.0
113
81
11
267
45
3
3
46
1.38
50311--50526
36
6.0
35
76
17
169
44
2
5
47
1.39
50365--50527
36
4.5
36
82
12
183
45
3
5
45
1.44
51539--51592
20
2.7
20
94
0
90
1
46
0
51
1.11
63402--63434
2
16.5
2
100
0
66
48
0
0
51
1.00
69922--69975
20
2.6
20
75
16
56
42
0
0
57
0.98
69990--70041
27
2.0
27
88
3
79
53
0
3
42
1.19
70071--70122
23
2.3
23
86
0
68
46
3
0
50
1.20
70134--70260
54
2.4
52
76
11
132
50
1
0
47
1.16
70296--70335
20
2.0
20
85
9
55
55
0
2
42
1.13
70348--70396
24
2.0
25
84
4
64
48
2
2
46
1.25
74335--74395
10
6.1
10
82
0
77
57
21
13
8
1.62
74341--74395
20
2.8
20
100
0
110
56
23
14
5
1.59
74660--74691
14
2.1
16
88
11
50
50
18
15
15
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80939--80963
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!