genome.fa.s3626.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003626.1 Hibiscus syriacus cultivar Beakdansim tig00007672_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55488

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652--1686	3	12.0	3	93	6	63	68	0	0	31	0.90
2466--2906	226	2.0	222	91	4	717	45	7	7	39	1.61
3134--3179	20	2.4	18	79	13	56	54	8	17	19	1.68
5464--5529	33	2.0	33	87	0	96	28	1	45	24	1.62
7313--7356	19	2.4	19	92	3	72	31	2	9	56	1.43
7436--8649	197	6.1	199	96	1	2248	37	14	15	32	1.88
7436--8649	395	3.1	395	96	1	2256	37	14	15	32	1.88
10111--10178	21	3.4	18	69	21	55	36	8	35	19	1.83
10111--10208	6	16.3	6	80	0	70	36	7	34	21	1.81
10126--10212	3	29.0	3	77	0	84	35	5	34	24	1.79
10114--10204	42	2.2	42	91	0	146	35	7	35	21	1.83
10111--10208	18	5.4	18	78	0	88	36	7	34	21	1.81
11677--12026	184	1.9	182	97	1	664	35	14	16	34	1.88
12296--12358	23	2.7	23	90	0	90	36	6	19	38	1.77
12296--12368	23	3.2	23	86	3	85	35	5	19	39	1.75
12722--12786	23	2.8	23	90	0	94	35	7	18	38	1.80
12989--13025	18	2.1	18	89	0	56	32	5	10	51	1.60
12981--13027	24	2.0	24	86	0	67	34	4	14	46	1.64
19274--19313	18	2.2	18	100	0	80	37	15	10	37	1.80
23032--23070	20	1.9	20	89	5	60	43	17	10	28	1.82
28150--30600	814	3.0	814	99	0	4811	40	17	15	26	1.90
31828--31857	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32340--32365	10	2.6	10	100	0	52	53	7	7	30	1.57
34955--35001	23	2.0	23	100	0	94	57	12	12	17	1.65
35536--35696	10	14.8	11	67	22	67	26	2	3	67	1.20
35988--36039	3	17.3	3	100	0	104	32	0	0	67	0.91
36998--37043	22	2.1	22	88	4	67	60	10	4	23	1.47
37207--37266	31	1.9	32	96	3	113	28	6	20	45	1.76
40392--40434	21	2.0	22	90	4	70	41	18	23	16	1.89
40535--40576	18	2.4	18	88	4	59	61	7	2	28	1.35
43220--43382	64	2.5	66	80	7	167	31	21	20	26	1.98

Tables:   1

The End!