genome.fa.s3627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003627.1 Hibiscus syriacus cultivar Beakdansim tig00007673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99670

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3973--4235	132	2.0	129	83	3	330	12	23	22	41	1.88
4098--4824	153	4.7	153	86	6	808	14	21	21	42	1.88
4101--5082	153	6.2	152	80	9	784	14	20	20	43	1.87
4163--4824	315	2.1	305	82	7	784	14	20	21	43	1.88
4527--5113	162	3.6	159	77	8	422	17	20	18	43	1.88
5279--5531	137	1.8	139	82	5	332	18	22	23	34	1.96
8814--8855	22	1.9	22	90	9	68	30	14	2	52	1.54
13951--13981	15	2.1	15	100	0	62	25	32	0	41	1.56
16777--16804	2	14.0	2	100	0	56	50	0	0	50	1.00
20252--20293	6	7.5	6	87	12	63	30	52	16	0	1.44
20890--20944	19	2.8	19	75	5	56	36	23	20	20	1.95
20886--21029	41	3.5	41	86	2	184	38	24	18	18	1.92
20956--21091	62	2.2	62	82	5	159	37	26	16	19	1.93
30817--30864	14	3.5	13	83	11	51	47	2	2	47	1.25
33163--33265	36	2.9	36	97	0	188	23	17	16	42	1.88
39461--39511	7	7.0	7	75	16	50	39	3	15	41	1.66
40410--40483	37	2.0	37	84	5	96	50	1	4	44	1.29
42328--42382	26	2.2	26	77	6	69	74	1	3	20	1.06
45319--45420	34	3.0	34	98	0	195	37	5	12	44	1.67
49917--50012	29	3.3	29	85	1	102	41	25	6	27	1.79
57141--57197	29	1.9	30	85	3	80	38	22	3	35	1.72
57234--57286	18	3.0	18	91	2	81	13	22	45	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67163--67289	30	4.2	30	98	0	245	32	24	19	23	1.98
72785--72911	30	4.2	30	98	0	245	32	24	19	23	1.98
73013--73066	21	2.6	21	96	0	99	42	16	1	38	1.59
80282--80334	17	3.4	17	70	24	62	33	0	13	52	1.40
80278--80334	29	2.0	29	96	0	105	33	0	12	54	1.38
80503--80537	15	2.3	15	90	0	52	8	62	20	8	1.49
80705--81017	154	2.0	157	97	2	596	30	10	20	38	1.86
84948--84989	22	1.9	22	95	0	75	35	21	19	23	1.96
87045--87105	2	30.5	2	100	0	122	50	0	0	49	1.00
87570--87621	25	2.1	25	96	0	95	38	3	9	48	1.54
89234--89273	14	2.8	14	80	3	53	45	0	0	55	0.99
89564--89826	87	3.0	87	98	0	508	31	12	18	37	1.88
90947--91331	184	2.1	183	89	5	593	47	8	3	41	1.50
91927--91978	17	3.2	17	75	10	54	50	13	3	32	1.60
92618--92682	20	2.9	24	77	17	84	16	12	13	56	1.66
92627--92682	10	5.2	10	76	16	58	14	12	16	57	1.66
92618--92684	24	3.0	24	78	10	70	17	13	13	55	1.70

Tables:   1

The End!