Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003628.1 Hibiscus syriacus cultivar Beakdansim tig00007685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90574
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:10860 original size:37 final size:35
Alignment explanation
Indices: 10802--10884 Score: 114
Period size: 37 Copynumber: 2.3 Consensus size: 35
10792 TTTCATTATC
*
10802 ATTTTTC-AACAAACATCTACCAAACTTTGAAAAATT
1 ATTTTTCAAAGAAACATCTACCAAACTTTG--AAATT
*
10838 ATTTTTCAAAGAAACATTTACCAAACTTTGAAATT
1 ATTTTTCAAAGAAACATCTACCAAACTTTGAAATT
10873 ATTTTTTCAAAG
1 A-TTTTTCAAAG
10885 TTGGTTGCCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 6 0.14
36 17 0.40
37 20 0.47
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (35 bp):
ATTTTTCAAAGAAACATCTACCAAACTTTGAAATT
Found at i:15469 original size:35 final size:35
Alignment explanation
Indices: 15382--15500 Score: 148
Period size: 36 Copynumber: 3.3 Consensus size: 35
15372 ATTCCATTAT
* * *
15382 CATTTTTCAATAAACATCTATCAAACTTTGAAAAAC
1 CATTTTTCAAAAAACATTTACCAAACTTTG-AAAAC
* *
15418 TATTTTTCAAAGAAACATTTACCAAACTTTGAAACC
1 CATTTTTCAAA-AAACATTTACCAAACTTTGAAAAC
* *
15454 CATTTTCCAAAAAACATTTACCAAACTTTGAAAAT
1 CATTTTTCAAAAAACATTTACCAAACTTTGAAAAC
15489 CATTTTTTCAAA
1 CA-TTTTTCAAA
15501 GTTGGTTACC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
35 24 0.34
36 30 0.42
37 17 0.24
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (35 bp):
CATTTTTCAAAAAACATTTACCAAACTTTGAAAAC
Found at i:19411 original size:27 final size:26
Alignment explanation
Indices: 19373--19425 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
19363 TCACTATAAT
* *
19373 TAATATAATTATGTTATTTTAAATTTA
1 TAATATAATTATGATA-ATTAAATTTA
19400 TAATA-AATTTATGATAATTAAATTTA
1 TAATATAA-TTATGATAATTAAATTTA
19426 GTTTTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (26 bp):
TAATATAATTATGATAATTAAATTTA
Found at i:19471 original size:37 final size:36
Alignment explanation
Indices: 19430--19545 Score: 96
Period size: 37 Copynumber: 3.2 Consensus size: 36
19420 AATTTAGTTT
19430 TTATATTAATTACACTTCTTTATATTTTTTATAATTC
1 TTATATTAATTACA-TTCTTTATATTTTTTATAATTC
** ** * *
19467 TTATATT-A-TA-ATT-TGAATATTATAAATATGATTT
1 TTATATTAATTACATTCTTTATATT-T-TTTATAATTC
* *
19501 TTATATTAATTCAAATTCTTTATATTATTTATAATTC
1 TTATATTAATT-ACATTCTTTATATTTTTTATAATTC
19538 TTATATTA
1 TTATATTA
19546 TAAATTTTAT
Statistics
Matches: 59, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
32 6 0.10
33 3 0.05
34 14 0.24
35 3 0.05
36 2 0.03
37 22 0.37
38 3 0.05
39 6 0.10
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (36 bp):
TTATATTAATTACATTCTTTATATTTTTTATAATTC
Found at i:19524 original size:19 final size:20
Alignment explanation
Indices: 19500--19545 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
19490 AAATATGATT
19500 TTTATATTAATTCA-AATTC
1 TTTATATTAATTCATAATTC
*
19519 TTTATATT-ATTTATAATTC
1 TTTATATTAATTCATAATTC
19538 -TTATATTA
1 TTTATATTA
19546 TAAATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATATTAATTCATAATTC
Found at i:19543 original size:18 final size:18
Alignment explanation
Indices: 19500--19546 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
19490 AAATATGATT
19500 TTTATATTAATTCAAATTC
1 TTTATATT-ATTCAAATTC
*
19519 TTTATATTATTTATAATTC
1 TTTATATTATTCA-AATTC
19538 -TTATATTAT
1 TTTATATTAT
19547 AAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATATTATTCAAATTC
Found at i:19551 original size:34 final size:34
Alignment explanation
Indices: 19445--19551 Score: 101
Period size: 34 Copynumber: 3.1 Consensus size: 34
19435 TTAATTACAC
*
19445 TTCTTTATATTTTTTATAATTCTTATATTAT-AA
1 TTCTTTATATTATTTATAATTCTTATATTATAAA
** * * *
19478 TT-TGAATATTATAAATATGATTTTTATATTAATTCAAA
1 TTCTTTATATTAT--TTATAATTCTTATATT-A-T-AAA
19516 TTCTTTATATTATTTATAATTCTTATATTATAAA
1 TTCTTTATATTATTTATAATTCTTATATTATAAA
19550 TT
1 TT
19552 TTATTTATAA
Statistics
Matches: 56, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
32 7 0.12
33 2 0.04
34 18 0.32
35 2 0.04
36 2 0.04
37 13 0.23
38 4 0.07
39 8 0.14
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (34 bp):
TTCTTTATATTATTTATAATTCTTATATTATAAA
Found at i:19559 original size:13 final size:14
Alignment explanation
Indices: 19525--19561 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
19515 ATTCTTTATA
19525 TTATTTAT-AATTC
1 TTATTTATAAATTC
19538 TTATATTATAAATT-
1 TTAT-TTATAAATTC
19552 TTATTTATAA
1 TTATTTATAA
19562 TCACTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 8 0.36
15 4 0.18
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTATAAATTC
Found at i:24892 original size:31 final size:31
Alignment explanation
Indices: 24854--24978 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
24844 AGGGTCGAGG
24854 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
24885 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
24916 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
** * *
24947 AATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
24978 G
1 G
24979 GTCCTTCGGG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
31 87 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:29580 original size:31 final size:31
Alignment explanation
Indices: 29542--29666 Score: 189
Period size: 31 Copynumber: 4.0 Consensus size: 31
29532 AGGGTCGAGG
29542 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
29573 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
29604 GTTTACATATGTTCTTCGGGACATATGAACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
29635 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
29666 G
1 G
29667 GTCCTTCGGG
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 85 0.99
32 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:30992 original size:13 final size:12
Alignment explanation
Indices: 30957--31019 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
30947 AATAAACTAT
30957 TTATAATTAATA
1 TTATAATTAATA
30969 TTAAAATAATTATATA
1 TT---ATAATTA-ATA
30985 TTATAATTAATA
1 TTATAATTAATA
*
30997 TTA-ATATTAA-C
1 TTATA-ATTAATA
31008 TTAT-ATTAATA
1 TTATAATTAATA
31019 T
1 T
31020 AATATAGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 15
0.71 0.03 0.25
Matches are distributed among these distances:
10 5 0.12
11 5 0.12
12 13 0.31
13 7 0.17
15 7 0.17
16 5 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (12 bp):
TTATAATTAATA
Found at i:31012 original size:28 final size:27
Alignment explanation
Indices: 30937--31100 Score: 94
Period size: 28 Copynumber: 6.1 Consensus size: 27
30927 ATCCCTATAA
*
30937 AATTTATATTAATA-AAC-TAT-TTAT
1 AATTAATATTAATATAACTTATATTAT
* *
30961 AATTAATATTAAAATAATTATATATTAT
1 AATTAATATTAATATAACT-TATATTAT
30989 AATTAATATTAATATTAACTTATA-T-T
1 AATTAATATTAATA-TAACTTATATTAT
* * * *
31015 AATATAATA-TAGT-TTA-TAAT-TTGT
1 AAT-TAATATTAATATAACTTATATTAT
**
31039 AATTAATATTAATATAAAATATAGTCTAT
1 AATTAATATTAATATAACTTATA-T-TAT
*
31068 AAAGTTAATATTAATATAAACTATATGTTAT
1 -AA-TTAATATTAATAT-AACT-TATATTAT
31099 AA
1 AA
31101 ATTATATAGT
Statistics
Matches: 106, Mismatches: 16, Indels: 30
0.70 0.11 0.20
Matches are distributed among these distances:
23 9 0.08
24 21 0.20
25 4 0.04
26 9 0.08
27 9 0.08
28 22 0.21
29 6 0.06
30 4 0.04
31 16 0.15
32 3 0.03
33 3 0.03
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (27 bp):
AATTAATATTAATATAACTTATATTAT
Found at i:31015 original size:16 final size:16
Alignment explanation
Indices: 30957--31019 Score: 65
Period size: 16 Copynumber: 3.8 Consensus size: 16
30947 AATAAACTAT
30957 TTATAATTAATATTAAA
1 TTAT-ATTAATATTAAA
*
30974 ATA-ATTATATATTATAA
1 TTATATTA-ATATTA-AA
*
30991 TTAATATTAATATTAAC
1 TT-ATATTAATATTAAA
31008 TTATATTAATAT
1 TTATATTAATAT
31020 AATATAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
15 4 0.10
16 16 0.41
17 8 0.21
18 7 0.18
19 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TTATATTAATATTAAA
Found at i:31079 original size:31 final size:31
Alignment explanation
Indices: 31041--31101 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
31031 TAATTTGTAA
31041 TTAATATTAATATAAAATATA-GTCTATAAAG
1 TTAATATTAATATAAAATATATGT-TATAAAG
*
31072 TTAATATTAATATAAACTATATGTTATAAA
1 TTAATATTAATATAAAATATATGTTATAAA
31102 TTATATAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (31 bp):
TTAATATTAATATAAAATATATGTTATAAAG
Found at i:31113 original size:21 final size:21
Alignment explanation
Indices: 31082--31245 Score: 70
Period size: 21 Copynumber: 7.6 Consensus size: 21
31072 TTAATATTAA
*
31082 TATAAACTATATGTTATAAAT
1 TATATACTATATGTTATAAAT
* *
31103 TATATAGTATA-GTTTATAAAA
1 TATATACTATATG-TTATAAAT
31124 TATATACTATAT-TAATATAAAT
1 TATATACTATATGT--TATAAAT
** * *
31146 TATAGTTAAGATA-ATTA-ACAT
1 TATA--TACTATATGTTATAAAT
* *
31167 TAATATAAACTATATAGTACATTAA-
1 T-ATAT--ACTATAT-GT-TATAAAT
*
31192 TATAAACTATA-GTTTATAAAT
1 TATATACTATATG-TTATAAAT
* *
31213 TATATACTATAGGTTATAAAG
1 TATATACTATATGTTATAAAT
*
31234 TATAAACTATAT
1 TATATACTATAT
31246 AGTACACTAA
Statistics
Matches: 105, Mismatches: 21, Indels: 34
0.66 0.13 0.21
Matches are distributed among these distances:
20 8 0.08
21 58 0.55
22 26 0.25
24 10 0.10
25 2 0.02
26 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (21 bp):
TATATACTATATGTTATAAAT
Found at i:31114 original size:88 final size:88
Alignment explanation
Indices: 31016--31223 Score: 228
Period size: 88 Copynumber: 2.4 Consensus size: 88
31006 ACTTATATTA
** * * * *
31016 ATATAATATAGTTTATAATTTGTA-ATTAATATTAATATAAAATATAGTCTATA-A-AGTTAATA
1 ATATAATATAGTTTATAAAATATATACT-ATATTAATATAAAATATAGT-TA-AGATAATTAACA
31078 TTAATATAAACTATATGTTATAAATT
63 TTAATATAAACTATATGTTATAAATT
* *
31104 ATATAGTATAGTTTATAAAATATATACTATATTAATATAAATTATAGTTAAGATAATTAACATTA
1 ATATAATATAGTTTATAAAATATATACTATATTAATATAAAATATAGTTAAGATAATTAACATTA
* *
31169 ATATAAACTATATAGTACATTAA-T
66 ATATAAACTATAT-GT-TATAAATT
*
31193 ATA-AACTATAGTTTATAAATTATATACTATA
1 ATATAA-TATAGTTTATAAAATATATACTATA
31224 GGTTATAAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
86 1 0.01
87 3 0.03
88 62 0.61
89 32 0.31
90 4 0.04
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (88 bp):
ATATAATATAGTTTATAAAATATATACTATATTAATATAAAATATAGTTAAGATAATTAACATTA
ATATAAACTATATGTTATAAATT
Found at i:31204 original size:20 final size:21
Alignment explanation
Indices: 31163--31204 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
31153 AAGATAATTA
31163 ACATTAATATAAACTATATAGT
1 ACATTAATATAAAC-ATATAGT
31185 ACATTAATATAAAC-TATAGT
1 ACATTAATATAAACATATAGT
31205 TTATAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
22 14 0.70
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (21 bp):
ACATTAATATAAACATATAGT
Found at i:31278 original size:18 final size:18
Alignment explanation
Indices: 31255--31326 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 18
31245 TAGTACACTA
31255 ATATAGTTTACATATAAT
1 ATATAGTTTACATATAAT
* *
31273 ATATAGTTTATATATACT
1 ATATAGTTTACATATAAT
*
31291 A-AT-G--AACTATATAAT
1 ATATAGTTTAC-ATATAAT
* *
31306 ATATAGTTTATATATACT
1 ATATAGTTTACATATAAT
31324 ATA
1 ATA
31327 GTATAAATTA
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
14 1 0.02
15 7 0.17
16 3 0.07
17 3 0.07
18 26 0.63
19 1 0.02
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (18 bp):
ATATAGTTTACATATAAT
Found at i:31572 original size:2 final size:2
Alignment explanation
Indices: 31409--31553 Score: 106
Period size: 2 Copynumber: 71.0 Consensus size: 2
31399 ATATGTAAAT
*
31409 TA TA T- TA TA TA GTA TA TA -A TT TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
31449 TA AA TA TA AA CTA TA GTA TA TA TA TA TA -A GTCA AA TG TA -A CTA
1 TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA -T-A TA TA TA TA -TA
31492 TA TA GTA -A TA TCA -A CTA TA GTA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA T-A TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA
31534 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
31554 GGTCAAATGT
Statistics
Matches: 116, Mismatches: 10, Indels: 34
0.73 0.06 0.21
Matches are distributed among these distances:
1 7 0.06
2 96 0.83
3 12 0.10
4 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (2 bp):
TA
Found at i:31585 original size:13 final size:13
Alignment explanation
Indices: 31567--31594 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31557 CAAATGTAAA
31567 ATATATAGTTCAT
1 ATATATAGTTCAT
31580 ATATATAGTTCAT
1 ATATATAGTTCAT
31593 AT
1 AT
31595 GTAAACTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (13 bp):
ATATATAGTTCAT
Found at i:31606 original size:18 final size:18
Alignment explanation
Indices: 31583--31617 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31573 AGTTCATATA
31583 TATAGTTCATATGTAAAC
1 TATAGTTCATATGTAAAC
*
31601 TATAGTTCGTATGTAAA
1 TATAGTTCATATGTAAA
31618 TATCAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (18 bp):
TATAGTTCATATGTAAAC
Found at i:31642 original size:42 final size:40
Alignment explanation
Indices: 31591--31702 Score: 128
Period size: 42 Copynumber: 2.9 Consensus size: 40
31581 TATATAGTTC
*
31591 ATATGTAAACTATAGTTCGTATGTAAATATCAACTATATTTT
1 ATATGTAAACTATAGTTCGTATATAAATATCAACTA-A-TTT
*
31633 ATATGTAAACTATAGTTAGTATATAAACTAT--A-TAATTT
1 ATATGTAAACTATAGTTCGTATATAAA-TATCAACTAATTT
*
31671 ATA---AAACTATAGTTCATATATAAATATCAACT
1 ATATGTAAACTATAGTTCGTATATAAATATCAACT
31703 TTAGTATATA
Statistics
Matches: 62, Mismatches: 4, Indels: 13
0.78 0.05 0.16
Matches are distributed among these distances:
34 3 0.05
35 19 0.31
36 1 0.02
37 1 0.02
38 6 0.10
39 1 0.02
40 2 0.03
41 1 0.02
42 25 0.40
43 3 0.05
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (40 bp):
ATATGTAAACTATAGTTCGTATATAAATATCAACTAATTT
Found at i:31645 original size:18 final size:19
Alignment explanation
Indices: 31617--31665 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
31607 TCGTATGTAA
* *
31617 ATATCAACTATATTTTA-T
1 ATATAAACTATATGTTAGT
*
31635 ATGTAAACTATA-GTTAGT
1 ATATAAACTATATGTTAGT
31653 ATATAAACTATAT
1 ATATAAACTATAT
31666 AATTTATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (19 bp):
ATATAAACTATATGTTAGT
Found at i:31749 original size:13 final size:13
Alignment explanation
Indices: 31731--31769 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
31721 ATGTGTAAAC
31731 TATATAGTTTATA
1 TATATAGTTTATA
*
31744 TATATAGTTCATA
1 TATATAGTTTATA
*
31757 TATATAGTATATA
1 TATATAGTTTATA
31770 AATAAAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (13 bp):
TATATAGTTTATA
Found at i:31768 original size:33 final size:33
Alignment explanation
Indices: 31643--31769 Score: 107
Period size: 35 Copynumber: 3.7 Consensus size: 33
31633 ATATGTAAAC
* *
31643 TATAGTT-AGTATATAAACTATATAATTTATAAAA
1 TATAGTTCA-TATATAAACTATATAGTTTAT-ATA
*
31677 CTATAGTTCATATATAAA-TATCA-ACTTTAGTATATA
1 -TATAGTTCATATATAAACTAT-ATA-GTT--TATATA
* *
31713 TATAGTTCATGTGTAAACTATATAGTTTATATA
1 TATAGTTCATATATAAACTATATAGTTTATATA
* *
31746 TATAGTTCATATATATAGTATATA
1 TATAGTTCATATATAAACTATATA
31770 AATAAAAACT
Statistics
Matches: 76, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
33 26 0.34
34 4 0.05
35 36 0.47
36 7 0.09
37 3 0.04
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (33 bp):
TATAGTTCATATATAAACTATATAGTTTATATA
Found at i:31782 original size:20 final size:20
Alignment explanation
Indices: 31758--31831 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
31748 TAGTTCATAT
31758 ATATAGTATATAAATAAAAA
1 ATATAGTATATAAATAAAAA
* *
31778 CTATAGTTTCTATAAATAGTATAAA
1 ATATAG--TATATAAATA--A-AAA
*
31803 ATATAGTATATAAATATAAA
1 ATATAGTATATAAATAAAAA
*
31823 TTATAGTAT
1 ATATAGTAT
31832 GTAGTTTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
20 16 0.37
22 9 0.21
23 9 0.21
24 1 0.02
25 8 0.19
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.38
Consensus pattern (20 bp):
ATATAGTATATAAATAAAAA
Found at i:31822 original size:29 final size:29
Alignment explanation
Indices: 31788--31855 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
31778 CTATAGTTTC
31788 TATAAATAGTATAAAATATAG-TATATAAA
1 TATAAATA-TATAAAATATAGTTATATAAA
** *
31817 TATAAAT-TATAGTATGTAGTTTATATAAA
1 TATAAATATATAAAATATAG-TTATATAAA
31846 TATAAATATA
1 TATAAATATA
31856 AACCCTAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 9 0.27
29 22 0.67
30 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (29 bp):
TATAAATATATAAAATATAGTTATATAAA
Found at i:31870 original size:14 final size:14
Alignment explanation
Indices: 31848--31904 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 14
31838 TATATAAATA
31848 TAAAT-ATAAACCC
1 TAAATCATAAACCC
* **
31861 TAAGTCATAAACTA
1 TAAATCATAAACCC
* *
31875 TAAACCCTAAACCC
1 TAAATCATAAACCC
31889 TAAATC-TAAACCC
1 TAAATCATAAACCC
31902 TAA
1 TAA
31905 CCCCTAAACC
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
13 14 0.41
14 20 0.59
ACGTcount: A:0.49, C:0.26, G:0.02, T:0.23
Consensus pattern (14 bp):
TAAATCATAAACCC
Found at i:31900 original size:20 final size:20
Alignment explanation
Indices: 31875--31912 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
31865 TCATAAACTA
31875 TAAACCCTAAACCCTAAATC
1 TAAACCCTAAACCCTAAATC
*
31895 TAAACCCTAACCCCTAAA
1 TAAACCCTAAACCCTAAA
31913 CCATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAACCCTAAACCCTAAATC
Found at i:31906 original size:6 final size:7
Alignment explanation
Indices: 31875--31914 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
31865 TCATAAACTA
31875 TAAACCC
1 TAAACCC
31882 TAAACCC
1 TAAACCC
*
31889 TAAA-TC
1 TAAACCC
31895 TAAACCC
1 TAAACCC
*
31902 TAACCCC
1 TAAACCC
31909 TAAACC
1 TAAACC
31915 ATATATATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:31942 original size:24 final size:22
Alignment explanation
Indices: 31909--31968 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
31899 CCCTAACCCC
*
31909 TAAACCATATATATTACATA-TATA
1 TAAACTATATA-ATT-CATATTA-A
*
31933 TAAACTATATAATTTATATTAA
1 TAAACTATATAATTCATATTAA
31955 TAAACTATATAATT
1 TAAACTATATAATT
31969 TATACAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 18 0.55
23 5 0.15
24 10 0.30
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAACTATATAATTCATATTAA
Found at i:32170 original size:22 final size:22
Alignment explanation
Indices: 32145--32213 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
32135 TTATACATAA
32145 TATATATATAAACTATATAGTT
1 TATATATATAAACTATATAGTT
*
32167 TATATATATAATAC-ATATA-CT
1 TATATATATAA-ACTATATAGTT
*
32188 T-TACATATAAACTATATAGTT
1 TATATATATAAACTATATAGTT
32209 TATAT
1 TATAT
32214 TTTATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 2 0.05
20 13 0.33
21 4 0.10
22 18 0.46
23 2 0.05
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (22 bp):
TATATATATAAACTATATAGTT
Found at i:32185 original size:31 final size:31
Alignment explanation
Indices: 32127--32185 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
32117 ATACATGGTA
*
32127 TATATAGTTTATACATAATATATATATAAAC
1 TATATAGTTTATACATAATATACATATAAAC
*
32158 TATATAGTTTATATAT-ATAATACATATA
1 TATATAGTTTATACATAAT-ATACATATA
32186 CTTTACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (31 bp):
TATATAGTTTATACATAATATACATATAAAC
Found at i:32809 original size:221 final size:215
Alignment explanation
Indices: 32308--33223 Score: 1445
Period size: 215 Copynumber: 4.3 Consensus size: 215
32298 TGATCCCTTT
* *
32308 TGTGTTGTTTAATTTATTTAAAATTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCACA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
* *
32373 TTTTATTTGTATCTGAAATTGACCCATACTTATTACTTATTTATATTTTTAAATTGGCTCATAAC
66 TTTTATTTGCATCTGAAATTGACCCATACTTATTACTTATTTATATTTTTAAATTGGCCCATAAC
*
32438 TTTTTAAATGGGTATAATTTAGTA-TTTTTTGTATTAATTTCAACATCATAATTTAAAATTATTT
131 TTTTTAAATGGGTATAATTTAGTATTTTTTTGTATTAATTTCAACATCACAATTTAAAATT-TTT
* * *
32502 CAATTCGATCCCTCGTCAATG
195 CGATTTGATCCCTCATCAATG
32523 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
* * * *
32588 TTTTATTTGCATCTGAAATTGACCCTTACTTATTAATTATTTCTATTTTTAAATTGGCCCTTAAC
66 TTTTATTTGCATCTGAAATTGACCCATACTTATTACTTATTTATATTTTTAAATTGGCCCATAAC
32653 TTTTTAAATGGGTATAATTTAGTAATTTTTTTGTATTAATTTCAACATCACAATTTAAAATTACT
131 TTTTTAAATGGGTATAATTTAGT-ATTTTTTTGTATTAATTTCAACATCACAATTT-AAA--A-T
32718 TATTTCGATTTGATCCCTCATCAATG
191 T-TTTCGATTTGATCCCTCATCAATG
* * *
32744 TGTGTTGTTTGATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTTGTCGTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
* *
32809 TTTTATTTGCATATGAAATTGA-CC---C--A-TACTTATTTCTATTTTTAAATTGGCCCATAAC
66 TTTTATTTGCATCTGAAATTGACCCATACTTATTACTTATTTATATTTTTAAATTGGCCCATAAC
* *
32867 TTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAAGATCACAATTTAAAATTATTT
131 TTTTTAAATGGGTATAATTTAGTATTTTTTTGTATTAATTTCAACATCACAATTTAAAATT-TTT
*
32932 TGATTTGATCCCTCATCAATG
195 CGATTTGATCCCTCATCAATG
* *
32953 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTTATATTTGTTCAATTTAGTACTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
* *
33018 TTTTATTTGCATCTGAAATTGATCCATACTTATTACTTAATTATATTTTT-AATTGGCCCATAAC
66 TTTTATTTGCATCTGAAATTGACCCATACTTATTACTTATTTATATTTTTAAATTGGCCCATAAC
*
33082 TTTTTAAATGGGTATAATTTAGTACTTTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTTT
131 TTTTTAAATGGGTATAATTTAGTA--TTTTTTTGTATTAATTTCAACATCACAATTTAAAATTTT
33147 TCGATTTGATCCCTCATCAATG
194 TCGATTTGATCCCTCATCAATG
*
33169 TGTGTTGTTTAATTTATTTAATTTTTTATTTGTAATTTCATATTTGTTCAATTTA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTA
33224 ATTCTTAAAT
Statistics
Matches: 651, Mismatches: 35, Indels: 29
0.91 0.05 0.04
Matches are distributed among these distances:
209 107 0.16
210 3 0.00
212 3 0.00
213 31 0.05
214 53 0.08
215 185 0.28
216 92 0.14
217 64 0.10
218 3 0.00
220 3 0.00
221 107 0.16
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (215 bp):
TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
TTTTATTTGCATCTGAAATTGACCCATACTTATTACTTATTTATATTTTTAAATTGGCCCATAAC
TTTTTAAATGGGTATAATTTAGTATTTTTTTGTATTAATTTCAACATCACAATTTAAAATTTTTC
GATTTGATCCCTCATCAATG
Found at i:36971 original size:24 final size:24
Alignment explanation
Indices: 36944--36989 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
36934 TTACCATCAA
36944 CAATGAAACCACTATTAACCGAAG
1 CAATGAAACCACTATTAACCGAAG
*
36968 CAATGAAGCCACTATTAACCGA
1 CAATGAAACCACTATTAACCGA
36990 CCTTGTATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.13, T:0.17
Consensus pattern (24 bp):
CAATGAAACCACTATTAACCGAAG
Found at i:39478 original size:16 final size:16
Alignment explanation
Indices: 39459--39491 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
39449 TTTGTTAGAA
39459 TTTTGTGCTGACAAAG
1 TTTTGTGCTGACAAAG
39475 TTTTGTGCTGACAAAG
1 TTTTGTGCTGACAAAG
39491 T
1 T
39492 AAAGTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (16 bp):
TTTTGTGCTGACAAAG
Found at i:43401 original size:18 final size:19
Alignment explanation
Indices: 43366--43402 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
43356 CACGGAATGT
43366 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
43386 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
43403 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:51912 original size:45 final size:49
Alignment explanation
Indices: 51822--51914 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 49
51812 AAGTCCATCA
* * *
51822 AATTTAGCAAAATAAAGTAAGTATTAAATGAGAAATAATAAAAAATTAC
1 AATTTAACAAAATAAAGTAAATATCAAATGAGAAATAATAAAAAATTAC
*
51871 AATTTAACAAAATAAAGTAAATA-CAAAT-A-TAATAA-AAAAAATTA
1 AATTTAACAAAATAAAGTAAATATCAAATGAGAAATAATAAAAAATTA
51915 TCGATGTCTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
45 9 0.22
46 5 0.12
47 1 0.03
48 4 0.10
49 21 0.52
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.26
Consensus pattern (49 bp):
AATTTAACAAAATAAAGTAAATATCAAATGAGAAATAATAAAAAATTAC
Found at i:54129 original size:17 final size:18
Alignment explanation
Indices: 54086--54126 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
54076 AAATTATATT
54086 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
54103 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
54121 ATTAAA
1 AGTAAA
54127 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:54189 original size:10 final size:11
Alignment explanation
Indices: 54166--54208 Score: 56
Period size: 10 Copynumber: 4.1 Consensus size: 11
54156 ACCTTAAACA
54166 GAGAGAATATTT
1 GAGAGAA-ATTT
54178 GAGAGAAA-TT
1 GAGAGAAATTT
54188 GAGA-AAATTT
1 GAGAGAAATTT
54198 GAGAG-AATTT
1 GAGAGAAATTT
54208 G
1 G
54209 GTGTGATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 3 0.10
10 18 0.62
11 1 0.03
12 7 0.24
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
GAGAGAAATTT
Found at i:56075 original size:20 final size:19
Alignment explanation
Indices: 56052--56097 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
56042 GATATACCAA
56052 GTAAAAATATGATAAAACCG
1 GTAAAAA-ATGATAAAACCG
56072 GTAACAAAATGATAAAACCG
1 GTAA-AAAATGATAAAACCG
56092 GTAAAA
1 GTAAAA
56098 CGTTACCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.57, C:0.11, G:0.15, T:0.17
Consensus pattern (19 bp):
GTAAAAAATGATAAAACCG
Found at i:56185 original size:181 final size:182
Alignment explanation
Indices: 55839--56311 Score: 644
Period size: 181 Copynumber: 2.6 Consensus size: 182
55829 GATCCAAATT
* * * * * ** ** *
55839 AAAAATGTGTCGATCCAAAATGATATAACAGGTAAAACTATAACAAAACTAGTATTGAAATTATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * * * *
55904 AAACCGATAAAGCGCTACTAGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGATACCAGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* *
55969 GTGAATTTAAAAGAGAAGCAATTTTAAATCCTATAA-AGTGTCGATACTTTTA
131 GTGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAATA-TGTCGATACTTTAA
* * *
56021 AAAAATGTATCGATCCAAAACGATATACCAAGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
56086 AAACCGGTAAAACGTTACCAGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCAGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* **
56150 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATATGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAATATGTCGATACTTTAA
* *
56202 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
56267 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCAGATATATTGAAAGTGTCGATACTTT
56312 CTTAAGTACG
Statistics
Matches: 256, Mismatches: 34, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
181 165 0.64
182 91 0.36
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCAGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAATATGTCGATACTTTAA
Found at i:56255 original size:20 final size:19
Alignment explanation
Indices: 56232--56278 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
56222 CGATATAACA
56232 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
56252 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
56272 GGTAAAA
1 GGTAAAA
56279 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:56280 original size:17 final size:19
Alignment explanation
Indices: 56241--56283 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
56231 AGGTAAAAAT
56241 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
56261 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
56278 ATGATA
1 ATGATA
56284 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:56450 original size:24 final size:24
Alignment explanation
Indices: 56423--56475 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
56413 TGTATCGATT
56423 AAATATAAA-TAACATATCCGATGA
1 AAATATAAACTAA-ATATCCGATGA
**
56447 AAATATAAACTAAATATCCTCTGA
1 AAATATAAACTAAATATCCGATGA
56471 AAATA
1 AAATA
56476 GATAGAACGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (24 bp):
AAATATAAACTAAATATCCGATGA
Found at i:58407 original size:15 final size:15
Alignment explanation
Indices: 58387--58415 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
58377 GTTGTATTGG
58387 GGGATGACGGTGAGT
1 GGGATGACGGTGAGT
58402 GGGATGACGGTGAG
1 GGGATGACGGTGAG
58416 GGAAAACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.55, T:0.17
Consensus pattern (15 bp):
GGGATGACGGTGAGT
Found at i:58530 original size:21 final size:21
Alignment explanation
Indices: 58500--58564 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
58490 AAGACAATCA
* *
58500 AGAGTTGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
58521 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
58542 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
58563 AG
1 AG
58565 GCATAAGGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.42, C:0.09, G:0.31, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:58640 original size:33 final size:33
Alignment explanation
Indices: 58598--58663 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
58588 AAATAGATGG
*
58598 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
58631 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
58664 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:58884 original size:18 final size:17
Alignment explanation
Indices: 58846--58899 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 17
58836 GAAAAAATAT
58846 GAAGAAGAAAAGAGGGAG
1 GAAGAAGAAAAGA-GGAG
*
58864 GAAGAAGAAGAAGA-GAT
1 GAAGAAGAA-AAGAGGAG
*
58881 G--GAAGAAATGAGGAG
1 GAAGAAGAAAAGAGGAG
58896 GAAG
1 GAAG
58900 GAAGTCGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
14 3 0.10
15 9 0.31
17 4 0.14
18 9 0.31
19 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.04
Consensus pattern (17 bp):
GAAGAAGAAAAGAGGAG
Found at i:61341 original size:200 final size:200
Alignment explanation
Indices: 60876--61751 Score: 1555
Period size: 200 Copynumber: 4.4 Consensus size: 200
60866 AAACCAAAAG
*
60876 TAACCGGTACAAGTATACCGGTTTTGTGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
1 TAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
60941 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
66 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
61006 ATATAT-AAAAGTGTCGATCCC-AAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
131 ATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
61069 CAATC
196 CAATC
61074 TAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
1 TAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
61139 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
66 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
61204 ATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
131 ATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
61269 CAATC
196 CAATC
*
61274 TAACCGGTACAAGTATACCAGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
1 TAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
*
61339 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAAGGTGCAACCATAAAGTGTCGATCC
66 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
*
61404 ATATATAAAAAGTGTCGATCCCAAAAGCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
131 ATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
61469 CAATC
196 CAATC
* * *
61474 TAACCGGTACAATTATACCGGTTTTATGAGATAATAGGTCTAAATAATGTGTCGACACTTTTTTA
1 TAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
* *
61539 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGCTGCAACCATAAAGTGTCGATCC
66 GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
* *
61604 ATATATAAAAAGTGTCGATCCCATAAACATCGAAAACCAAAAGTACAATGTAATATGTAATTTTT
131 ATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
61669 CAATC
196 CAATC
* * *
61674 TAACCGGTACAAGTATACCGGTTTTATGAGAGAAT-TGGTATATAAT-ATGTATCGACACTGTTT
1 TAACCGGTACAAGTATACCGGTTTTATGAGAGAATAT-GTCTA-AATAATGTGTCGACACTTTTT
*
61737 AATGTTT-TGTCGATA
64 TA-GTTTGTGTCGATA
61752 CTAATTTAAA
Statistics
Matches: 652, Mismatches: 21, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
198 135 0.21
199 15 0.02
200 495 0.76
201 7 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (200 bp):
TAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTA
GTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCC
ATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTT
CAATC
Found at i:63220 original size:6 final size:6
Alignment explanation
Indices: 63209--63266 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
63199 CAAGCGGTCA
* * * * * *
63209 ATGAAG ATGAAG CTGACG ATGAAG AAGATG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
*
63257 ATGACG ATGA
1 ATGAAG ATGA
63267 CGACGACGAC
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.19
Consensus pattern (6 bp):
ATGAAG
Found at i:63230 original size:18 final size:18
Alignment explanation
Indices: 63209--63302 Score: 89
Period size: 18 Copynumber: 5.2 Consensus size: 18
63199 CAAGCGGTCA
* *
63209 ATGAAGATGAAGCTGACG
1 ATGAAGATGATGATGACG
* *
63227 ATGAAGAAGATGATGAAG
1 ATGAAGATGATGATGACG
*
63245 ATGACGATGATGATGACG
1 ATGAAGATGATGATGACG
* * * *
63263 ATGACGACGACGACGACG
1 ATGAAGATGATGATGACG
* *
63281 ATGATGATGATGATGATG
1 ATGAAGATGATGATGACG
63299 ATGA
1 ATGA
63303 TCCAAACAAG
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.38, C:0.10, G:0.33, T:0.19
Consensus pattern (18 bp):
ATGAAGATGATGATGACG
Found at i:63231 original size:12 final size:12
Alignment explanation
Indices: 63209--63302 Score: 80
Period size: 12 Copynumber: 7.8 Consensus size: 12
63199 CAAGCGGTCA
*
63209 ATGAAGATGAAG
1 ATGACGATGAAG
*
63221 CTGACGATGAAG
1 ATGACGATGAAG
* *
63233 AAGATGATGAAG
1 ATGACGATGAAG
*
63245 ATGACGATGATG
1 ATGACGATGAAG
*
63257 ATGACGATGACG
1 ATGACGATGAAG
* * *
63269 ACGACGACGACG
1 ATGACGATGAAG
* *
63281 ATGATGATGATG
1 ATGACGATGAAG
*
63293 ATGATGATGA
1 ATGACGATGA
63303 TCCAAACAAG
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 67 1.00
ACGTcount: A:0.38, C:0.10, G:0.33, T:0.19
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:63241 original size:3 final size:3
Alignment explanation
Indices: 63235--63303 Score: 66
Period size: 3 Copynumber: 23.0 Consensus size: 3
63225 CGATGAAGAA
* * * * * * * *
63235 GAT GAT GAA GAT GAC GAT GAT GAT GAC GAT GAC GAC GAC GAC GAC GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
63283 GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT
63304 CCAAACAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.22
Consensus pattern (3 bp):
GAT
Found at i:63244 original size:9 final size:9
Alignment explanation
Indices: 63222--63303 Score: 74
Period size: 9 Copynumber: 9.1 Consensus size: 9
63212 AAGATGAAGC
63222 TGACGATGA
1 TGACGATGA
* *
63231 AGAAGATGA
1 TGACGATGA
*
63240 TGAAGATGA
1 TGACGATGA
* *
63249 CGATGATGA
1 TGACGATGA
63258 TGACGATGA
1 TGACGATGA
* *
63267 CGACGACGA
1 TGACGATGA
*
63276 CGACGATGA
1 TGACGATGA
*
63285 TGATGATGA
1 TGACGATGA
*
63294 TGATGATGA
1 TGACGATGA
63303 T
1 T
63304 CCAAACAAGT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 61 1.00
ACGTcount: A:0.37, C:0.10, G:0.33, T:0.21
Consensus pattern (9 bp):
TGACGATGA
Found at i:63267 original size:6 final size:6
Alignment explanation
Indices: 63222--63302 Score: 72
Period size: 6 Copynumber: 13.5 Consensus size: 6
63212 AAGATGAAGC
* * * * *
63222 TGACGA TGAAGA AGATGA TGAAGA TGACGA TGATGA TGACGA TGACGA
1 TGACGA TGACGA TGACGA TGACGA TGACGA TGACGA TGACGA TGACGA
* * * * *
63270 CGACGA CGACGA TGATGA TGATGA TGATGA TGA
1 TGACGA TGACGA TGACGA TGACGA TGACGA TGA
63303 TCCAAACAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.37, C:0.10, G:0.33, T:0.20
Consensus pattern (6 bp):
TGACGA
Found at i:65083 original size:183 final size:183
Alignment explanation
Indices: 64513--65084 Score: 981
Period size: 183 Copynumber: 3.1 Consensus size: 183
64503 CAAAGTTTTC
* * *
64513 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATT-
1 ACACTTTTTAATATTGTGTCGGAACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTG
* * *
64577 TAAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTA
65 TCAAAAAGTGTCGACATT---TACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTA
*
64640 ATATAACCGGTATAAATATACCGGTTTTAAGAGCGAATAGGTCTACAACCTATATCG
127 ATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
* *
64697 ACACTTTTTAATATTGTGTCAGAACTTTATGTCCAGATTGAAAGAAAAATGTGTCGATACATTGT
1 ACACTTTTTAATATTGTGTCGGAACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGT
64762 CAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATAT
64827 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
64880 ACA-TTTTCTAATATTGTGTCGGAACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTG
1 ACACTTTT-TAATATTGTGTCGGAACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTG
*
64944 TCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
65 TCAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATA
65009 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
130 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
65063 ACACTTTTTAATATTGTGTCGG
1 ACACTTTTTAATATTGTGTCGG
65085 TAATTTTAAG
Statistics
Matches: 372, Mismatches: 11, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
182 4 0.01
183 294 0.79
184 71 0.19
186 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGAACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:67949 original size:23 final size:23
Alignment explanation
Indices: 67918--67990 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
67908 ATAGGTAAAA
*
67918 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
67941 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
67964 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
67987 ATAT
1 ATAT
67991 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:68432 original size:23 final size:23
Alignment explanation
Indices: 68401--68473 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
68391 ATAGGTAAAA
*
68401 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
68424 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
68447 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
68470 ATAT
1 ATAT
68474 TGTAAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:68918 original size:23 final size:23
Alignment explanation
Indices: 68887--68959 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
68877 ATAGGTAAAA
*
68887 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
68910 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
68933 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
68956 ATAT
1 ATAT
68960 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:69404 original size:23 final size:23
Alignment explanation
Indices: 69373--69445 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
69363 ATAGGTAAAA
*
69373 ATATGATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
* *
69396 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGTGCTT
69419 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
69442 ATAT
1 ATAT
69446 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:69785 original size:490 final size:490
Alignment explanation
Indices: 67581--70820 Score: 5938
Period size: 483 Copynumber: 6.7 Consensus size: 490
67571 AGGTATGTAC
67581 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
67646 GTTACGGTATATATTATTATTAAATTAAAAACAATAAAC--ATATATTACATA-TT-TTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
67707 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATA-TTTAT-AAA-ATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
67769 A-TTTTTATGCAAATGAAATTATTAAATTAATATTGTAGGGGGAAAACATGAAACACTA-T-AAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
67831 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
67896 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
*
67961 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
68026 AC-TTTTTCACTGTGGAAAACATTAA-TTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
68059 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
68124 GTTACGG--TATA-TATTATTAAATTAAAAACAATAAACATATATATTACATA-TTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* * *
68185 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAACCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
68250 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
68314 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
68379 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
*
68444 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAATATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
68509 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
68544 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
68609 GTTACGGTATATATTATTATTAAACTAAAAACAATAAAC--ATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
68672 TTTGGTTAATA-TGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
68736 ATTTTTTGTGCAAATGAAATTATTAAATTAATA-TGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
68800 AAAATTGAAATATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATAGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
68865 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
68930 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
68995 AC-TTTTTCACTGTGGAAAACATTAATTTAAAGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
69029 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
69093 GTTACGG--TATATTATTATTAAACTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
69156 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
69221 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
69286 AAAATTGAAATATAGATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATAGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
*
69351 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGTGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
69416 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
69481 ACTTTTTTCACTGTGGAAAACATTAATTTAAAGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
69516 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
69581 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
69646 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATTAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
69711 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
69776 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
69841 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
69906 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
69971 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
70006 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
70070 GTTAC-G-ATATA-TATTATTAAATTAAAAAC-ATAAACATATATATT--ATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
70129 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTAAAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
70194 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
70259 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
70324 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCG-TTAATATAATGTAATAGGTAGC
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTT-ATATAATGTAATAGGTAGC
* *
70388 TTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
* *
70453 TACTTTTTTCACCGTGGAAAATATTAATTTAAGGTT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
70489 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
70554 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTATATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
70619 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
70684 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT--AA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
70747 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAAGTATAGA
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTAT-AAAAAGTATAGA
70812 CACTTTCAA
325 CACTTTCAA
70821 CATATTATAA
Statistics
Matches: 2694, Mismatches: 36, Indels: 53
0.97 0.01 0.02
Matches are distributed among these distances:
475 25 0.01
476 4 0.00
477 14 0.01
478 116 0.04
479 5 0.00
480 3 0.00
481 17 0.01
482 87 0.03
483 620 0.23
484 84 0.03
485 295 0.11
486 541 0.20
487 138 0.05
488 107 0.04
489 33 0.01
490 605 0.22
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (490 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAGAC
ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:69894 original size:23 final size:23
Alignment explanation
Indices: 69863--69935 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
69853 ATAGGTAAAA
*
69863 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
69886 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
69909 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
69932 ATAT
1 ATAT
69936 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:70377 original size:23 final size:23
Alignment explanation
Indices: 70345--70409 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
70335 AATAGGTAAA
*
70345 AATATGATGTAATAGGTAGCGTT
1 AATATAATGTAATAGGTAGCGTT
*
70368 AATATAATGTAATAGGTAGCTTT
1 AATATAATGTAATAGGTAGCGTT
*
70391 TATATAATGTAATAGGTAG
1 AATATAATGTAATAGGTAG
70410 TGCTTATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.37
Consensus pattern (23 bp):
AATATAATGTAATAGGTAGCGTT
Found at i:70380 original size:973 final size:970
Alignment explanation
Indices: 67581--70820 Score: 5959
Period size: 973 Copynumber: 3.3 Consensus size: 970
67571 AGGTATGTAC
67581 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
67646 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATTACATA-TT-TTATTATCTT
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATTACATATTTATTATTATCTT
* *
67709 TGGTTAATATTGTTAAATTTAAATACTAAATAATA-TTTAT-AAA-ATCAAAACAATCAAATAA-
131 TGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAAT
* *
67770 TTTTTATGCAAATGAAATTATTAAATTAATATTGTAGGGGGAAAACATGAAACACTA-TAAAAAA
196 TTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
67834 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAACACT
261 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAACACT
67899 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
326 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
*
67964 ATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTTCATACT
391 ATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACT
*
68029 TTTTCACTGTGGAAAACATTAA-TTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAAT
456 TTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGT
68093 AATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAAATTAAAAACAATAA
521 AATTATAGGCGTCTAATGATTTA-TTTTTACGTTACGGTATATATTATTAAATTAAAAACAATAA
* * *
68158 ACATATATATTACATATTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACTAAATAATAT
585 ACATATATATTATAT-TTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTAT
*
68223 TTTATAAAATATCAAAACAACCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTA
649 TTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTA
68288 GGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTA
714 GGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTA
68352 TCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGT
779 TCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGT
*
68417 AGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAAT
844 AGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGT
68482 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
909 ATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
68544 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
68609 GTTACGGTATATATTATTATTAAACTAAAAACAATAAACATATATTACATATTTATTATTATCTT
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATTACATATTTATTATTATCTT
68674 TGGTTAATA-TGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAAT
131 TGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAAT
68738 TTTTTGTGCAAATGAAATTATTAAATTAATA-TGTAGGTGGAAAACATGAAACACTATTAAAAAA
196 TTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAA
* * *
68802 AATTGAAATATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATAGACAC
260 AATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAACAC
68867 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
325 TTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTT
68932 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
390 TATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATAC
*
68997 TTTTTCACTGTGGAAAACATTAATTTAAAGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAG
455 TTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAG
*
69062 TAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATTATTATTAAACTAAAAACAATA
520 TAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATA-TATTATTAAATTAAAAACAATA
69127 AACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATT
584 AACATATATATT--ATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATT
69192 ATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
647 ATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
* *
69257 TAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAATATAGATTACATAACTTTAAAAAAAG
712 TAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAG
*
69322 TATCGATCTTTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAG
777 TATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAG
*
69387 GTAGTGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAA
842 GTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAA
*
69452 GTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAAGTT
907 GTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
69516 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
69581 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAAC--ATATATTACATATTTATTATTATC
*
69646 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATTAAATA
129 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
69711 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
194 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
69776 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAAC
258 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAAC
69841 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
323 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
69906 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
388 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
69971 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATT
453 AC-TTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATT
*
70036 TAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGATATATATTATTAAATTAAAAAC-A
517 TAGTAATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATATTATTAAATTAAAAACAA
70100 TAAACATATATATTATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATT
582 TAAACATATATATTATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATT
*
70165 ATTTTAAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
647 ATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
70230 TAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAG
712 TAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAG
70295 TATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAG
777 TATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAG
*
70360 GTAGCG-TTAATATAATGTAATAGGTAGCTTTTATATAATGTAATAGGTAGTGCTTATATTGTAA
842 GTAGCGCTT-ATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAA
* * *
70424 AGTATTTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACCGTGGAAAATATTAATTTAAGGTT
906 AGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
70489 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
70554 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTATATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAAC--ATATATTACATATTTATTATTATC
70619 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
129 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
70684 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
194 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
70748 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAAGTATAGAC
259 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTAT-AAAAAGTATAAAC
70813 ACTTTCAA
323 ACTTTCAA
70821 CATATTATAA
Statistics
Matches: 2212, Mismatches: 45, Indels: 31
0.97 0.02 0.01
Matches are distributed among these distances:
963 115 0.05
964 25 0.01
965 24 0.01
966 3 0.00
967 42 0.02
968 31 0.01
969 237 0.11
970 96 0.04
971 187 0.08
972 355 0.16
973 615 0.28
974 35 0.02
975 100 0.05
976 242 0.11
977 105 0.05
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (970 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATTACATATTTATTATTATCTT
TGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAAT
TTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATAAACACT
TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
ATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACT
TTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGT
AATTATAGGCGTCTAATGATTTATTTTTACGTTACGGTATATATTATTAAATTAAAAACAATAAA
CATATATATTATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTT
TATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGG
TGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATC
GATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG
CGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTAT
CTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:70416 original size:23 final size:22
Alignment explanation
Indices: 70346--70418 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 22
70336 ATAGGTAAAA
* *
70346 ATATGATGTAATAGGTAGCGTT
1 ATATAATGTAATAGGTAGTGTT
*
70368 AATATAATGTAATAGGTAGCTTTT
1 -ATATAATGTAATAGGTAG-TGTT
70392 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTG-TT
70415 ATAT
1 ATAT
70419 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.02
23 41 0.93
24 2 0.05
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (22 bp):
ATATAATGTAATAGGTAGTGTT
Found at i:76226 original size:115 final size:117
Alignment explanation
Indices: 76056--76391 Score: 392
Period size: 126 Copynumber: 2.8 Consensus size: 117
76046 AATATACATA
* * *
76056 AATAAGATATTTACTTATTTAGAAATATCAGAAAAAGGGCTTCTAGGTGCTTTAAGACAGCTCTT
1 AATAAGATATTTATTTATTTAAAAATATCAG-AAAA-GGCTTCTAGGTGCCTTAAGACAGCTCTT
76121 TTCTTTGATATTAAAAAATAAATAAATATCAAAAACA-TT-TT-AT-TTTAATAT
64 TTCTTTGATATT-AAAAATAAATAAATATCAAAAACATTTCTTAATATTTAATAT
* * * * *
76172 AGTAAGTTATTTATTTATTCAAAAATATCAGAAAAGAGCTTCTAGGTACCTTAAGACAGCTGTTT
1 AATAAGATATTTATTTATTTAAAAATATCAGAAAAG-GCTTCTAGGTGCCTTAAGACAGCTCTTT
* * * *
76237 TCTTTGATATTGAAAAATAAATAAATAACCAAAACATTTTCTTAAAATAAAAATTTATTTT
65 TCTTTGATATT-AAAAATAAATAAATATCAAAAACA-TTTCTT--AAT----ATTTAATAT
*
76298 AATAAGATATTTATTTATTTAAAAATATCAGAAAATGGCTTCTAGGTGCCTTAAGACAACTCTTT
1 AATAAGATATTTATTTATTTAAAAATATCAGAAAA-GGCTTCTAGGTGCCTTAAGACAGCTCTTT
* *
76363 TCTTCGATATTAAAAACAAATAAATATCA
65 TCTTTGATATTAAAAATAAATAAATATCA
76392 TAATATGATT
Statistics
Matches: 184, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
114 1 0.01
115 62 0.34
116 26 0.14
117 2 0.01
118 2 0.01
121 2 0.01
125 15 0.08
126 73 0.40
127 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.37
Consensus pattern (117 bp):
AATAAGATATTTATTTATTTAAAAATATCAGAAAAGGCTTCTAGGTGCCTTAAGACAGCTCTTTT
CTTTGATATTAAAAATAAATAAATATCAAAAACATTTCTTAATATTTAATAT
Found at i:77437 original size:13 final size:14
Alignment explanation
Indices: 77419--77459 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
77409 TCTCTTCTTT
*
77419 TCGTTG-TTGGTCG
1 TCGTTGCTTGCTCG
77432 TCGTTGCTTGCTC-
1 TCGTTGCTTGCTCG
77445 TCGTTGCTTGCTCG
1 TCGTTGCTTGCTCG
77459 T
1 T
77460 GGTTTTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 19 0.76
14 6 0.24
ACGTcount: A:0.00, C:0.24, G:0.29, T:0.46
Consensus pattern (14 bp):
TCGTTGCTTGCTCG
Found at i:78005 original size:17 final size:17
Alignment explanation
Indices: 77983--78042 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
77973 ATTGAATAAT
77983 TTCTTCTCATTACGAAC
1 TTCTTCTCATTACGAAC
*
78000 TTCTTCTTC-TT-CAGATGAG
1 TTCTTC-TCATTAC-GA--AC
*
78019 TTCTTCTCATTATGAAC
1 TTCTTCTCATTACGAAC
78036 TTCTTCT
1 TTCTTCT
78043 GGCAAAGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
16 1 0.03
17 18 0.53
18 4 0.12
19 11 0.32
ACGTcount: A:0.18, C:0.25, G:0.08, T:0.48
Consensus pattern (17 bp):
TTCTTCTCATTACGAAC
Found at i:78244 original size:123 final size:120
Alignment explanation
Indices: 77930--78420 Score: 593
Period size: 123 Copynumber: 4.0 Consensus size: 120
77920 AGGTTGAACA
* * ** ** * *
77930 TTGATATTGCTCTATATCCTTCTACGATAGAGTCAAATAAAATATTGAATAATTTCTTCTCATTA
1 TTGATGTTGATCTAT-TCCTTCT-CGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
*
77995 CGAACTTCTTC-T--TCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTGGCAAA-G
64 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTC-TCTGG-AAATG
* * *
78050 TTGATGTTGATCTA--CCTTATGTGATAGAATCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
1 TTGATGTTGATCTATTCCTTCT-CGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
78113 GAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAGA-TGTCTCTGGAAATG
65 GAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGA-ACT-TCTCTGGAAATG
* *
78170 TTGATGTTGATCTATCTCCTTCTACGATAGAGTCGAGCAAAAGGTTGAACAAGCTCTTCTCATTA
1 TTGATGTTGATCTAT-TCCTTCT-CGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
**
78235 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTAAAAATG
64 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAATG
* * * * *
78293 TTGATGCTGATCTATCTCCTTCTGGATAGAGTCGAGCAAAAGGTTTAACAAGTTCTTCTTATTAT
1 TTGATGTTGATCTAT-TCCTTCTCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
* *
78358 GAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAAC-TCTACCTGGCAATG
65 GAACTTCTTCTTC-CTCTTCAGATGAGTTCTTCTCATTATGAACTTCT--CTGGAAATG
78416 TTGAT
1 TTGAT
78421 CCATCGATTG
Statistics
Matches: 327, Mismatches: 30, Indels: 25
0.86 0.08 0.07
Matches are distributed among these distances:
117 48 0.15
118 1 0.00
119 3 0.01
120 60 0.18
121 6 0.02
122 52 0.16
123 156 0.48
124 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (120 bp):
TTGATGTTGATCTATTCCTTCTCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATG
AACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAATG
Found at i:78589 original size:114 final size:113
Alignment explanation
Indices: 78205--78629 Score: 543
Period size: 114 Copynumber: 3.7 Consensus size: 113
78195 GATAGAGTCG
*
78205 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *** * *
78269 CATTATGAACTTT-CTCTAAAAATGTTGATGCTGATCTATCTCCTTCTGGAT-AGAGTCG
66 CATTATGAACTTTAC-CT-----TG-TAATGCTGATCCA--T-CGAAT-GATGA-ATTCA
* * *
78327 AGCAAAAGGTTTAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * *
78392 CATTATGAACTCTACCTGGCAATGTTGATCCATCGATTGATGAATTCA
66 CATTATGAACTTTACCTTGTAATGCTGATCCATCGAATGATGAATTCA
*
78440 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
78505 CATTATGAACTTTACCTTCGTAATGCTGATCCATCGAATGATGAATTCA
66 CATTATGAACTTTACCTT-GTAATGCTGATCCATCGAATGATGAATTCA
78554 AGCGAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
1 AGC-AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
78618 TCATTATGAACT
65 TCATTATGAACT
78630 CCTTCTTCCT
Statistics
Matches: 273, Mismatches: 25, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
113 83 0.30
114 100 0.37
115 5 0.02
117 9 0.03
118 1 0.00
122 41 0.15
123 33 0.12
124 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (113 bp):
AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
CATTATGAACTTTACCTTGTAATGCTGATCCATCGAATGATGAATTCA
Found at i:78614 original size:40 final size:40
Alignment explanation
Indices: 78570--78670 Score: 193
Period size: 40 Copynumber: 2.5 Consensus size: 40
78560 AAGTTGAACA
*
78570 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATG
78610 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATG
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATG
78650 AGTTCTTCTCATTATGAACTC
1 AGTTCTTCTCATTATGAACTC
78671 GACCTGGTAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.19, C:0.26, G:0.10, T:0.46
Consensus pattern (40 bp):
AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATG
Found at i:78735 original size:153 final size:154
Alignment explanation
Indices: 78456--78783 Score: 595
Period size: 153 Copynumber: 2.1 Consensus size: 154
78446 AGGTTGAACA
** **
78456 AGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
78521 TTCGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
66 TTCGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
78586 AACTTCTTCTTCCTTCTTCAGATG
131 AACTTCTTCTTCCTTCTTCAGATG
78610 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
*
78675 -TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
66 TTCGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
78739 AACTTCTTCTTCCTTCTTCAGATG
131 AACTTCTTCTTCCTTCTTCAGATG
*
78763 AGTTATTCTCATTATGAACTC
1 AGTTCTTCTCATTATGAACTC
78784 GACCTGGTAA
Statistics
Matches: 168, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
153 107 0.64
154 61 0.36
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (154 bp):
AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
TTCGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
AACTTCTTCTTCCTTCTTCAGATG
Found at i:78753 original size:113 final size:113
Alignment explanation
Indices: 78610--78896 Score: 556
Period size: 113 Copynumber: 2.5 Consensus size: 113
78600 TCTTCAGATG
*
78610 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
78675 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
*
78723 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
78788 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
78836 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
78897 CTTCTTCCTT
Statistics
Matches: 171, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 171 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (113 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
Found at i:78880 original size:40 final size:40
Alignment explanation
Indices: 78836--78936 Score: 184
Period size: 40 Copynumber: 2.5 Consensus size: 40
78826 AAGTTGAACA
78836 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
*
78876 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATG
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
*
78916 AGTTATTCTCATTATGAACTT
1 AGTTCTTCTCATTATGAACTT
78937 GACCTGGTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.47
Consensus pattern (40 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
Found at i:78880 original size:153 final size:153
Alignment explanation
Indices: 78723--79049 Score: 636
Period size: 153 Copynumber: 2.1 Consensus size: 153
78713 AAGTTGAACA
*
78723 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGACC
78788 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
78853 ACTTCTTCTTCCTTCTTCAGATG
131 ACTTCTTCTTCCTTCTTCAGATG
*
78876 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTTGACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGACC
78941 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
79006 ACTTCTTCTTCCTTCTTCAGATG
131 ACTTCTTCTTCCTTCTTCAGATG
79029 AGTTCTTCTCATTATGAACTC
1 AGTTCTTCTCATTATGAACTC
79050 GACCTGGTAA
Statistics
Matches: 172, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 172 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (153 bp):
AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGACC
TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
ACTTCTTCTTCCTTCTTCAGATG
Found at i:78912 original size:266 final size:266
Alignment explanation
Indices: 78343--79162 Score: 1480
Period size: 266 Copynumber: 3.1 Consensus size: 266
78333 AGGTTTAACA
* * * *
78343 AGTTCTTCTTATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
* * *
78408 TGGCAATGTTGATCCATCGATTGATGAATTCAAGC-AAAAGGTTGAACAAGTTCTTCTCATTATG
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAA-GTTGAACAAGTTCTTCTCATTATG
* ** *
78472 AACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTACCTTCGTAATGCTGATCC
130 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC-TGGTAATGCTGATCC
78537 ATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
194 ATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
78602 TTCAGATG
259 TTCAGATG
78610 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
78675 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
*
78740 ACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCGACCTGGTAATGCTGATCCAT
131 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGTAATGCTGATCCAT
78805 CGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTT
196 CGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTT
78870 CAGATG
261 CAGATG
* *
78876 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTTGACC
1 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
78941 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
66 TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
*
79006 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGTAATGTTGATCCAT
131 ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGTAATGCTGATCCAT
79071 CGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTT
196 CGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTT
79136 CAGATG
261 CAGATG
79142 AGTTCTTCTCATTATGAACTC
1 AGTTCTTCTCATTATGAACTC
79163 TACCTGGAAA
Statistics
Matches: 536, Mismatches: 16, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
266 370 0.69
267 162 0.30
268 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (266 bp):
AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
TGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
ACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGTAATGCTGATCCAT
CGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTT
CAGATG
Found at i:79175 original size:113 final size:113
Alignment explanation
Indices: 78876--79176 Score: 541
Period size: 113 Copynumber: 2.7 Consensus size: 113
78866 TCTTCAGATG
* *
78876 AGTTCTTCTCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACT-TGAC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCT-AC
*
78940 CTGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
65 CTGGTAATGTTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
*
78989 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
79054 TGGTAATGTTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
66 TGGTAATGTTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
79102 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
*
79167 TGGAAATGTT
66 TGGTAATGTT
79177 TTAATAATAA
Statistics
Matches: 181, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
113 181 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (113 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
TGGTAATGTTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACA
Found at i:79319 original size:76 final size:76
Alignment explanation
Indices: 79193--79373 Score: 274
Period size: 76 Copynumber: 2.4 Consensus size: 76
79183 ATAATAAAAA
* * * * *
79193 AAACATTATGCACTGTAGGGCTTACAGCTGACTCGAAGGTTTTGAAAACATCAAAAAGCTCCCAA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
79258 AGGCTTTTTGG
66 AGGCTTTTTGG
* * *
79269 AAACATCATGCACTGTAGGACTTATAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
79334 AGGCTTTTTGG
66 AGGCTTTTTGG
*
79345 AAACATCATACACTGTAGGAC-TACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
79374 TGGGAAATAG
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 7 0.07
76 88 0.93
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAA
AGGCTTTTTGG
Found at i:80074 original size:22 final size:22
Alignment explanation
Indices: 80049--80103 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
80039 AATAAAGCTT
*
80049 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAACCTA
* *
80071 TCATCTTTAAAAATAGAACCTA
1 TCATCTTTGAAAAGAGAACCTA
80093 TCATCTTTGAA
1 TCATCTTTGAA
80104 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAACCTA
Found at i:89127 original size:113 final size:113
Alignment explanation
Indices: 88963--89292 Score: 362
Period size: 113 Copynumber: 2.8 Consensus size: 113
88953 TATACATAAA
* * * *
88963 AAGATATTTACTTATTTAGAAATATCAGAAAAGGGTTCTAGGTGCTTTAAGACAGCTCTTTTCTT
1 AAGATATTTACTTATTCAGAAATATCAGAAAAGGCTTCTAGGTACCTTAAGACAGCTCTTTTCTT
*
89028 TGATATTAAAAAATAAATAAATATCAAAAACATTTTATTTTAAATAGT
66 TGATATTAAAAAATAAATAAATAACAAAAACATTTTATTTTAAATAGT
* *
89076 AAGATATTTATTTATTCA-AAATATCATAAAAGAGCTTCTAGGTACCTTAAGACAGCTCTTTTCT
1 AAGATATTTACTTATTCAGAAATATCAGAAAAG-GCTTCTAGGTACCTTAAGACAGCTCTTTTCT
* * ** *
89140 TTGATATTGAAAAATAAATAAATAACCAAAACATTTTCTTAAAATAAAAATTTATTTTAAT
65 TTGATATTAAAAAATAAATAAATAACAAAAACA--TT-TT---AT-----TTTA-AATAGT
* *
89201 AAGATATTTA-TTATTTA-AAATATCAGAAAATGGCTTCTAGGTGCCTTAAGACAGCTCTTTTCT
1 AAGATATTTACTTATTCAGAAATATCAGAAAA-GGCTTCTAGGTACCTTAAGACAGCTCTTTTCT
* *
89264 TCGATATT-AAAAATAAATAAATATCAAAA
65 TTGATATTAAAAAATAAATAAATAACAAAA
89293 TATGATTATT
Statistics
Matches: 185, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
112 13 0.07
113 74 0.40
115 2 0.01
116 2 0.01
119 2 0.01
123 19 0.10
124 59 0.32
125 14 0.08
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.37
Consensus pattern (113 bp):
AAGATATTTACTTATTCAGAAATATCAGAAAAGGCTTCTAGGTACCTTAAGACAGCTCTTTTCTT
TGATATTAAAAAATAAATAAATAACAAAAACATTTTATTTTAAATAGT
Found at i:90325 original size:11 final size:11
Alignment explanation
Indices: 90309--90334 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
90299 GTTGTTGGCG
90309 TCGTTGCTTGC
1 TCGTTGCTTGC
90320 TCGTTGCTTGC
1 TCGTTGCTTGC
90331 TCGT
1 TCGT
90335 GTTTGGTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.27, G:0.27, T:0.46
Consensus pattern (11 bp):
TCGTTGCTTGC
Done.