genome.fa.s3629.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003629.1 Hibiscus syriacus cultivar Beakdansim tig00007686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55776

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10784--10813	10	3.0	10	100	0	60	50	20	20	10	1.76
11281--12135	182	4.7	182	89	2	1186	40	14	16	28	1.87
14377--14412	18	2.1	18	89	5	56	36	8	47	8	1.64
14433--15012	199	2.9	197	82	5	659	38	13	15	32	1.86
15007--15169	87	1.9	87	98	0	317	31	14	12	41	1.83
15091--15135	23	2.0	23	95	0	81	37	20	8	33	1.83
15266--15587	161	2.0	161	97	0	608	37	6	9	46	1.61
21045--21096	20	2.6	20	81	6	61	42	28	17	11	1.84
21083--21237	20	7.7	20	86	4	222	32	28	19	19	1.96
21045--21237	40	4.8	40	82	5	203	35	28	18	17	1.94
21045--21237	60	3.2	60	81	5	219	35	28	18	17	1.94
21616--21672	14	3.7	14	70	20	51	8	26	21	43	1.81
21604--21673	33	2.2	32	94	2	122	10	24	20	45	1.81
21604--21654	14	3.0	18	70	24	56	9	25	21	43	1.83
21756--21832	21	3.7	21	81	6	102	46	18	22	12	1.82
21817--21873	14	3.7	14	75	20	60	43	22	24	8	1.81
21810--21889	33	2.4	33	95	0	142	47	22	21	8	1.78
21907--21963	14	3.7	14	75	20	60	8	24	22	43	1.81
21890--22012	33	3.5	33	88	10	165	10	23	18	47	1.80
21948--22012	21	3.1	21	86	4	105	10	24	15	49	1.76
23930--24050	19	6.6	19	82	10	144	44	28	17	9	1.79
24047--24212	19	9.2	19	75	13	145	10	19	24	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24047--24137	33	2.8	33	91	0	146	10	21	21	45	1.83
24047--24196	33	4.2	37	83	9	138	9	20	23	46	1.79
26683--26707	12	2.1	12	100	0	50	0	28	0	72	0.86
27620--27848	20	11.4	20	87	1	253	18	17	26	37	1.93
28513--28547	18	1.9	18	94	0	61	74	0	0	25	0.82
28513--28547	12	2.9	12	82	0	52	74	0	0	25	0.82
30126--30501	183	2.0	186	91	2	616	44	2	7	45	1.46
30819--30858	20	2.0	20	90	0	62	22	27	7	42	1.80
31248--31734	182	2.7	180	84	4	559	42	12	17	27	1.85
31706--31754	20	2.5	20	96	0	89	44	6	16	32	1.72
31524--31915	202	1.9	202	87	3	565	42	11	17	28	1.84
33760--33814	24	2.5	22	77	16	60	40	0	9	50	1.34
34778--34813	17	2.1	17	100	0	72	50	8	11	30	1.67
35979--36027	19	2.6	19	90	0	71	32	2	10	55	1.45
36360--37321	198	4.9	198	93	2	1561	37	16	15	30	1.90
36360--37510	198	5.8	200	89	3	911	37	15	15	31	1.89
37797--37848	15	3.5	15	94	0	86	17	48	1	32	1.58
41661--41706	21	2.1	21	84	4	56	30	15	10	43	1.81
41135--42504	200	6.8	200	88	2	1824	39	15	13	30	1.86
41861--41906	21	2.1	21	84	4	56	30	15	10	43	1.81
45646--46168	199	2.6	196	81	5	566	38	14	15	31	1.88
46092--46139	20	2.3	20	85	7	60	37	4	12	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46237--46284	23	2.1	23	84	0	60	33	16	6	43	1.73

Tables:   1

The End!