Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003631.1 Hibiscus syriacus cultivar Beakdansim tig00007689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125547

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3302--3351
21
2.4
22
80
10
59
50
8
8
34
1.61
20927--20965
16
2.5
16
87
4
53
30
20
12
35
1.90
31895--32092
58
3.4
58
79
4
218
30
16
14
38
1.88
34848--34874
14
1.9
14
100
0
54
62
0
0
37
0.95
37971--38267
148
2.0
148
100
0
594
35
20
17
26
1.95
43807--43889
27
3.1
27
98
0
157
31
19
19
30
1.96
58442--58473
16
2.0
16
100
0
64
50
6
6
37
1.53
64355--64382
2
14.0
2
100
0
56
50
0
0
50
1.00
64897--65010
20
5.7
20
87
2
174
13
22
22
41
1.88
64898--65013
61
1.9
61
100
0
232
13
22
23
40
1.90
65157--65189
6
5.5
6
100
0
66
33
51
15
0
1.43
65808--65873
19
3.3
19
70
12
60
40
19
19
19
1.91
65823--65894
22
3.4
22
69
11
78
37
23
19
19
1.94
65801--65914
41
2.8
41
90
4
176
40
21
19
18
1.92
66499--66613
57
2.0
56
85
9
153
42
17
10
29
1.82
70541--70590
24
2.2
22
82
13
57
34
0
6
60
1.21
71324--71349
2
13.0
2
100
0
52
50
0
0
50
1.00
72751--72813
25
2.5
26
97
2
119
58
7
4
28
1.47
83673--83724
15
3.4
15
82
12
70
78
5
0
15
0.92
83673--83733
15
3.9
16
76
8
63
80
6
0
13
0.90
83843--83941
37
2.7
36
77
13
112
76
7
6
10
1.14
84008--84051
20
2.2
20
88
8
63
77
11
2
9
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85175--85217
3
14.3
3
85
9
61
69
0
2
27
1.00
85265--85574
36
8.4
37
74
9
240
46
6
4
43
1.48
85273--85372
35
2.8
36
79
11
105
43
6
5
46
1.50
85359--85419
29
2.0
31
84
6
81
47
1
3
47
1.28
85230--85574
75
4.7
72
75
9
277
46
6
4
42
1.48
86233--87149
84
11.1
81
79
6
858
23
20
25
29
1.99
86286--87149
165
5.2
164
88
2
1234
23
20
25
29
1.99
86250--87149
330
2.7
330
89
3
1369
24
20
25
29
1.99
90209--90254
19
2.4
19
96
0
83
67
8
10
13
1.42
92199--92252
15
3.7
15
80
11
51
77
7
0
14
0.97
92361--92460
38
2.7
37
73
13
98
76
7
7
10
1.17
92527--92570
20
2.2
20
88
8
63
77
11
2
9
1.08
93788--93846
25
2.4
24
85
2
73
45
8
1
44
1.44
93830--94076
38
6.7
39
74
14
161
46
6
3
43
1.45
93863--93923
29
2.0
31
84
6
81
47
1
3
47
1.28
93813--94054
75
3.3
75
75
10
180
47
5
3
44
1.42
93928--94076
76
2.0
75
82
10
184
46
7
3
42
1.48
94145--94173
12
2.3
13
94
5
51
79
0
0
20
0.74
94763--94817
8
7.1
8
74
15
53
54
1
1
41
1.21
98608--98750
27
5.0
28
85
7
155
26
25
34
13
1.94
98675--98757
30
2.8
30
96
0
148
21
25
38
14
1.91
100937--100970
14
2.4
14
95
0
59
20
29
0
50
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113374--113419
19
2.4
18
82
7
56
45
2
4
47
1.34
113815--113847
17
2.0
17
88
5
50
60
12
15
12
1.59
121565--121617
2
26.5
2
100
0
106
0
49
0
50
1.00

Tables:   1

The End!