Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003632.1 Hibiscus syriacus cultivar Beakdansim tig00007690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61197
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:603 original size:21 final size:18
Alignment explanation
Indices: 549--602 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
539 ACTGAAAAAA
*
549 AGAGGAAAACACTAGTAC
1 AGAGGAAAACACTACTAC
567 AGAGGAAAACACTACTAC
1 AGAGGAAAACACTACTAC
585 AGAGGAAAACACTACTAC
1 AGAGGAAAACACTACTAC
603 TCAAGATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.50, C:0.20, G:0.19, T:0.11
Consensus pattern (18 bp):
AGAGGAAAACACTACTAC
Found at i:4003 original size:25 final size:25
Alignment explanation
Indices: 3954--4007 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
3944 CCGTCTCGTA
*
3954 TCGTCTCGGCTCGGCTCGGTACGAC
1 TCGTCTCGGCTCGGCTCGCTACGAC
3979 TCGTCTCGGCTCGGCTCAGCT-CGAC
1 TCGTCTCGGCTCGGCTC-GCTACGAC
4004 TCGT
1 TCGT
4008 AATCGTGGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 25 0.93
26 2 0.07
ACGTcount: A:0.07, C:0.37, G:0.30, T:0.26
Consensus pattern (25 bp):
TCGTCTCGGCTCGGCTCGCTACGAC
Found at i:5139 original size:2 final size:2
Alignment explanation
Indices: 5132--5161 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
5122 GTTAAATTTA
*
5132 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5162 TTATTTTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11988 original size:23 final size:25
Alignment explanation
Indices: 11956--12015 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 25
11946 ATAAAATTAT
**
11956 AAATAGTAAAATATTGAATA-TTTA
1 AAATAGTAAAATATAAAATATTTTA
11980 AAATA-TAAAATATAAAATATTTTA
1 AAATAGTAAAATATAAAATATTTTA
* *
12004 AATTATTAAAAT
1 AAATAGTAAAAT
12016 TATTAGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.39
24 13 0.42
25 6 0.19
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (25 bp):
AAATAGTAAAATATAAAATATTTTA
Found at i:12056 original size:3 final size:3
Alignment explanation
Indices: 12048--12074 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
12038 ACTCTTTTTA
12048 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
12075 AATTTTGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13594 original size:21 final size:21
Alignment explanation
Indices: 13545--13632 Score: 76
Period size: 21 Copynumber: 4.2 Consensus size: 21
13535 AATTATGTGA
*
13545 TAAGGTTTA-GGGTTTAGGATT
1 TAAGGTTTATGTG-TTAGGATT
*
13566 T-AGAGTTTATGTGATAGGATT
1 TAAG-GTTTATGTGTTAGGATT
*
13587 TAAGGTTTAAAGT-TTA-GAGTT
1 TAAGGTTT-ATGTGTTAGGA-TT
*
13608 TAAGGTTTATGTGTTAGGGTT
1 TAAGGTTTATGTGTTAGGATT
13629 TAAG
1 TAAG
13633 TTATGCCATG
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
20 7 0.13
21 39 0.72
22 8 0.15
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (21 bp):
TAAGGTTTATGTGTTAGGATT
Found at i:13594 original size:35 final size:35
Alignment explanation
Indices: 13537--13609 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
13527 TCATAACTAA
* *
13537 TTATGTGATAAGGTTTAGGGTTT-AGGATTTAGAGT
1 TTATGTGATAAGGTTTAAGGTTTAAAG-TTTAGAGT
13572 TTATGTGAT-AGGATTTAAGGTTTAAAGTTTAGAGT
1 TTATGTGATAAGG-TTTAAGGTTTAAAGTTTAGAGT
13607 TTA
1 TTA
13610 AGGTTTATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 3 0.09
35 29 0.85
36 2 0.06
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (35 bp):
TTATGTGATAAGGTTTAAGGTTTAAAGTTTAGAGT
Found at i:13616 original size:42 final size:42
Alignment explanation
Indices: 13545--13632 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
13535 AATTATGTGA
**
13545 TAAGGTTTAGGGTTTAGGATTTAGAGTTTATGTGATAGGATT
1 TAAGGTTTAAAGTTTAGGATTTAGAGTTTATGTGATAGGATT
* *
13587 TAAGGTTTAAAGTTTA-GAGTTTA-AGGTTTATGTGTTAGGGTT
1 TAAGGTTTAAAGTTTAGGA-TTTAGA-GTTTATGTGATAGGATT
13629 TAAG
1 TAAG
13633 TTATGCCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
41 3 0.08
42 37 0.93
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (42 bp):
TAAGGTTTAAAGTTTAGGATTTAGAGTTTATGTGATAGGATT
Found at i:13934 original size:17 final size:17
Alignment explanation
Indices: 13908--13944 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
13898 ATTCGAGTTT
* *
13908 GAGTTTGAGCTTTAATC
1 GAGTTCGAGCTTGAATC
13925 GAGTTCGAGCTTGAATC
1 GAGTTCGAGCTTGAATC
13942 GAG
1 GAG
13945 CTCAAAATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (17 bp):
GAGTTCGAGCTTGAATC
Found at i:13945 original size:11 final size:11
Alignment explanation
Indices: 13929--13993 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 11
13919 TTAATCGAGT
*
13929 TCGAGCTTGAA
1 TCGAGCTTCAA
13940 TCGAGC-TCAAAA
1 TCGAGCTTC--AA
13952 TCGAGCTTCAA
1 TCGAGCTTCAA
*
13963 TCGAGC-TCGAGTC
1 TCGAGCTTC-A--A
13976 TCGAGCTTCAA
1 TCGAGCTTCAA
13987 TCGAGCT
1 TCGAGCT
13994 CTTGAATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
10 3 0.07
11 22 0.50
12 8 0.18
13 9 0.20
14 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (11 bp):
TCGAGCTTCAA
Found at i:13984 original size:24 final size:23
Alignment explanation
Indices: 13923--13994 Score: 99
Period size: 23 Copynumber: 3.1 Consensus size: 23
13913 TGAGCTTTAA
*
13923 TCGAGTTCGAGCTTGAATCGAGC
1 TCGAGTTCGAGCTTCAATCGAGC
* **
13946 TCAAAATCGAGCTTCAATCGAGC
1 TCGAGTTCGAGCTTCAATCGAGC
13969 TCGAGTCTCGAGCTTCAATCGAGC
1 TCGAGT-TCGAGCTTCAATCGAGC
13993 TC
1 TC
13995 TTGAATTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 22 0.54
24 19 0.46
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (23 bp):
TCGAGTTCGAGCTTCAATCGAGC
Found at i:14816 original size:24 final size:23
Alignment explanation
Indices: 14726--14837 Score: 102
Period size: 23 Copynumber: 4.8 Consensus size: 23
14716 CAACGCGGTT
* * * *
14726 CTTCAGGACAATTCTACCTGATC
1 CTTCGGGACATTTCTACGTGGTC
**
14749 CTTCGGGACATTTCTACACGGTC
1 CTTCGGGACATTTCTACGTGGTC
* *
14772 CTTCGGGTCATTTCTATGTGGTC
1 CTTCGGGACATTTCTACGTGGTC
14795 CTTCGGGACAATTTCTACGTGG-C
1 CTTCGGGAC-ATTTCTACGTGGTC
14818 ACTTCGGTG-CATATTCTACG
1 -CTTCGG-GACAT-TTCTACG
14838 CGGCACTTCG
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
23 48 0.65
24 25 0.34
25 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (23 bp):
CTTCGGGACATTTCTACGTGGTC
Found at i:21027 original size:23 final size:22
Alignment explanation
Indices: 20970--21047 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
20960 CATCACAGCT
20970 CGTAATAATGCACCGAAGTGCCA
1 CGTAA-AATGCACCGAAGTGCCA
* *
20993 CGTAAATTTGCACCGAAGTGCCG
1 CGTAAA-ATGCACCGAAGTGCCA
**
21016 CGTAGAAATGCACTAAAGTGCCA
1 CGTA-AAATGCACCGAAGTGCCA
**
21039 TATAAAATG
1 CGTAAAATG
21048 TCCCTAAGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
22 6 0.13
23 37 0.82
24 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (22 bp):
CGTAAAATGCACCGAAGTGCCA
Found at i:33240 original size:13 final size:13
Alignment explanation
Indices: 33202--33234 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
33192 TTTCTAAGCG
33202 CTCTCTATCTTTT
1 CTCTCTATCTTTT
*
33215 CTCTCTCTCTTTT
1 CTCTCTATCTTTT
33228 CTCTCTA
1 CTCTCTA
33235 ATTTTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.36, G:0.00, T:0.58
Consensus pattern (13 bp):
CTCTCTATCTTTT
Found at i:45776 original size:3 final size:3
Alignment explanation
Indices: 45770--45845 Score: 89
Period size: 3 Copynumber: 24.0 Consensus size: 3
45760 TTTTTTATAT
* *
45770 TTA TTA TTA TTA TTT TTA TTA TTT TTA TTA TTTA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA
*
45817 TTA TTA ATA TTA TTA TTTA TTA TATA TTA
1 TTA TTA TTA TTA TTA -TTA TTA T-TA TTA
45846 CAGGCCCAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
3 51 0.80
4 13 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:45813 original size:35 final size:38
Alignment explanation
Indices: 45765--45844 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 38
45755 TGGTTTTTTT
45765 TATATTTATTATTATTATT-TT-TATTATT-TTTATTA
1 TATATTTATTATTATTATTATTATATTATTATTTATTA
*
45800 TTTATTTATTATTATTATTATTAATATTATTATTTATTA
1 TATATTTATTATTATTATTATT-ATATTATTATTTATTA
45839 TATATT
1 TATATT
45845 ACAGGCCCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
35 18 0.46
36 2 0.05
38 7 0.18
39 12 0.31
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (38 bp):
TATATTTATTATTATTATTATTATATTATTATTTATTA
Found at i:45845 original size:35 final size:31
Alignment explanation
Indices: 45761--45845 Score: 118
Period size: 32 Copynumber: 2.7 Consensus size: 31
45751 CATTTGGTTT
*
45761 TTTTTA-TATTTATTATTATTATTTTTATTA
1 TTTTTATTATTTATTATTATTATTATTATTA
45791 TTTTTATTATTTATTTATTATTATTATTATTA
1 TTTTTATTATTTA-TTATTATTATTATTATTA
* *
45823 ATATTATTATTTATTATATATTA
1 TTTTTATTATTTATTAT-TATTA
45846 CAGGCCCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 6 0.12
31 10 0.20
32 33 0.67
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (31 bp):
TTTTTATTATTTATTATTATTATTATTATTA
Found at i:47212 original size:3 final size:3
Alignment explanation
Indices: 47199--47257 Score: 52
Period size: 3 Copynumber: 20.3 Consensus size: 3
47189 TTATTTGCAA
* * *
47199 TAT TAT T-T TAT TAT TAT TAT TGCT T-T AAT TAT TAT T-T CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
*
47242 TAT TAT TTT TAT TAT T
1 TAT TAT TAT TAT TAT T
47258 TATATAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:47217 original size:26 final size:28
Alignment explanation
Indices: 47188--47249 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
47178 TATTTTAATC
*
47188 ATTATTTGC-AA-TATTATTTTATTATT
1 ATTATTTGCTAATTATTATTTCATTATT
47214 ATTA-TTGCTTTAATTATTATTTCATTATT
1 ATTATTTGC--TAATTATTATTTCATTATT
47243 ATTATTT
1 ATTATTT
47250 TTATTATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 4 0.13
26 4 0.13
28 2 0.07
29 18 0.60
30 2 0.07
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (28 bp):
ATTATTTGCTAATTATTATTTCATTATT
Found at i:47255 original size:26 final size:28
Alignment explanation
Indices: 47199--47257 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
47189 TTATTTGCAA
*
47199 TATTATTTTATTATTATTATTGCTTTAAT
1 TATTATTTCATTATTATTATT-CTTTAAT
47228 TATTATTTCATTATTATTATT-TTT-AT
1 TATTATTTCATTATTATTATTCTTTAAT
47254 TATT
1 TATT
47258 TATATAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 6 0.21
27 3 0.10
29 20 0.69
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (28 bp):
TATTATTTCATTATTATTATTCTTTAAT
Found at i:53181 original size:19 final size:19
Alignment explanation
Indices: 53153--53211 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
53143 ATCCCAGCAG
*
53153 AGAAATGAAATAAAAA-AAA
1 AGAAAAGAAA-AAAAAGAAA
53172 AGAAAAGAAAAAAAAGAAA
1 AGAAAAGAAAAAAAAGAAA
53191 AGAAAA-AAAAGAAGAAGAAA
1 AGAAAAGAAAA-AA-AAGAAA
53211 A
1 A
53212 AGGAAAATTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 9 0.25
19 20 0.56
20 7 0.19
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.03
Consensus pattern (19 bp):
AGAAAAGAAAAAAAAGAAA
Found at i:53184 original size:15 final size:14
Alignment explanation
Indices: 53165--53212 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
53155 AAATGAAATA
53165 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
53179 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
53193 AAAAAAAAGAAGAAG
1 AAAAAAAAGAA-AAG
53208 AAAAA
1 AAAAA
53213 GGAAAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 25 0.76
15 8 0.24
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:53186 original size:9 final size:10
Alignment explanation
Indices: 53164--53211 Score: 64
Period size: 9 Copynumber: 4.9 Consensus size: 10
53154 GAAATGAAAT
*
53164 AAAAAAAAAG
1 AAAAGAAAAG
53174 AAAAGAAAA-
1 AAAAGAAAAG
53183 AAAAGAAAAG
1 AAAAGAAAAG
53193 AAAA-AAAAG
1 AAAAGAAAAG
53202 AAGAAGAAAA
1 AA-AAGAAAA
53212 AGGAAAATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 16 0.47
10 14 0.41
11 4 0.12
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:55591 original size:115 final size:114
Alignment explanation
Indices: 55377--55717 Score: 522
Period size: 115 Copynumber: 3.0 Consensus size: 114
55367 AAGTGCCATG
55377 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
55442 TGGTTTGGTATGAATCCCAAAACTAATCATTGGATTTGAAAGATTAATT
66 TGGTTTGGTATGAATCCCAAAACTAATCATTGGATTTGAAAGATGAATT
* * *
55491 TGCTCATAGTAGAAAATAAAAAGACCCAATATCATCTTCTGGAAGTGTTCTTTGAGTTATCTAAT
1 TGCTCATAGTAG-AAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGAT
*
55556 CTGGTTTGGTATGAATCCCAAAATTAATCATTGGATTTGAAAGATGAATT
65 CTGGTTTGGTATGAATCCCAAAACTAATCATTGGATTTGAAAGATGAATT
* * *
55606 TGCGCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAATGTTCTTTAAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * * * * * *
55671 TAGTTCGGTAGGAA-CCACAGAACCAATCATTAGAATTGAAAGATGAA
66 TGGTTTGGTATGAATCC-CAAAACTAATCATTGGATTTGAAAGATGAA
55718 CTGCATGATC
Statistics
Matches: 206, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
113 2 0.01
114 96 0.47
115 108 0.52
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTATGAATCCCAAAACTAATCATTGGATTTGAAAGATGAATT
Found at i:58281 original size:22 final size:23
Alignment explanation
Indices: 58230--58285 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
58220 ATCTACACTC
*
58230 TTCAAAGATGATAGATTCCCATT
1 TTCAAAGATGACAGATTCCCATT
* *
58253 TTTAAAGATGACAGATTCTC-TT
1 TTCAAAGATGACAGATTCCCATT
58275 TTCAAAGATGA
1 TTCAAAGATGA
58286 AAGCTTTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (23 bp):
TTCAAAGATGACAGATTCCCATT
Found at i:58892 original size:113 final size:113
Alignment explanation
Indices: 58693--59413 Score: 977
Period size: 113 Copynumber: 6.4 Consensus size: 113
58683 GATTTAAATC
* * * ** * *
58693 CATCATTCAATGGATCAACAATGCCAAATAGAGTTCATAATAAGAAGAACTCATCTAAAGAAGGA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* ** *
58758 AGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTCATTTGAATC
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* ** * * *
58806 CATCATTCAATGGATCAATATTTCCAGTTAGAGTTCATAATTAGAAGAACTCATCTGAAGAAAGA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
58871 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGC-TGAA-T
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* * * * *
58917 --TCATTCGATGGATCAGTATTACCAGGTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
58980 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGTTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* * * * * * **
59028 CATCACTAGATGGATTAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
59093 AGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTTGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* * * *
59141 CATCATTCGATTGATCAGCAGTGCCAGTTAGAGTTCATAATTAGAAGAACTCATCTGAAGAATGA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
59206 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* * * * *
59254 CATCACTCGGTGGATCAGCAGTGCTAGTTAGAGTTCATAATGAGAAGAACTCATTTGAAGAAGGA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
59319 AGAAG-AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
* *
59366 CATCATTCGATGGATCAGCATTTCCAG-AAGAGTTCATAATGAGAAGAA
1 CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAA
59414 TTTGTTCAAC
Statistics
Matches: 543, Mismatches: 61, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
109 97 0.18
110 4 0.01
111 21 0.04
112 67 0.12
113 354 0.65
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (113 bp):
CATCATTCGATGGATCAGCATTGCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATT
Found at i:59088 original size:222 final size:225
Alignment explanation
Indices: 58694--59413 Score: 986
Period size: 222 Copynumber: 3.2 Consensus size: 225
58684 ATTTAAATCC
* * * * ** * * *
58694 ATCATTCAATGGATCAACAATGCCAAATAGAGTTCATAATAAGAAGAACTCATCTAAAGAAGGAA
1 ATCATTCGATGGATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAA
* * * *
58759 GAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTCATTTGAATCCATCATTCA-ATGGATCA
66 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGTTTGAATTCATCACT-AGATGGATCA
* *
58823 A-TATTTCCAGTTAGAGTTCATAATTAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAAT
130 ACT-TTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
*
58887 GAGAAGAACTTGTTCAACTTTTCGC-TGAA-T
194 GAGAAGAACTTGTTCAACTTTTTGCTTGAATT
* *
58917 -TCATTCGATGGATCAGTATTACCAGGTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAA
1 ATCATTCGATGGATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAA
*
58981 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGTTTGAATTCATCACTAGATGGATTAA
66 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGTTTGAATTCATCACTAGATGGATCAA
** *
59046 CTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAA
131 CTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
59111 GAAGAACTTGTTCAACTTTTTGCTTGAATT
196 GAAGAACTTGTTCAACTTTTTGCTTGAATT
* * * * * *
59141 CATCATTCGATTGATCAGCAGTGCCAGTTAGAGTTCATAATTAGAAGAACTCATCTGAAGAATGA
1 -ATCATTCGATGGATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGA
* * * * *
59206 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCA
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGTTTGAATTCATCACTAGATGGATCA
* ** * * *
59271 GCAGTGCTAGTTAGAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAG-AGTTCATAATG
130 ACTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
59335 AGAAGAACTTGTTCAACTTTTTGCTTGAATT
195 AGAAGAACTTGTTCAACTTTTTGCTTGAATT
* *
59366 CATCATTCGATGGATCAGCATTTCCA-GAAGAGTTCATAATGAGAAGAA
1 -ATCATTCGATGGATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAA
59414 TTTGTTCAAC
Statistics
Matches: 440, Mismatches: 51, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
221 1 0.00
222 191 0.43
223 5 0.01
224 20 0.05
225 64 0.15
226 159 0.36
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (225 bp):
ATCATTCGATGGATCAGCATTACCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAA
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGTTTGAATTCATCACTAGATGGATCAA
CTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
GAAGAACTTGTTCAACTTTTTGCTTGAATT
Found at i:59400 original size:72 final size:72
Alignment explanation
Indices: 59319--59487 Score: 254
Period size: 72 Copynumber: 2.4 Consensus size: 72
59309 TGAAGAAGGA
* *
59319 AGAAGAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTT-GAATTCATCA-TTCGATGGATC
1 AGAAGAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG-TTCAAATTCATCACTT-GATGGATC
* *
59382 AGCATTTCC
64 AACATTGCC
*
59391 AGAAGAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAAATTCATCACTTGATGGATCAA
1 AGAAGAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTCAAATTCATCACTTGATGGATCAA
59456 CATTGCC
66 CATTGCC
59463 AGAAG-GTTCATAATGAGAAGAACTT
1 AGAAGAGTTCATAATGAGAAGAACTT
59488 ATCTGAAGAG
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
71 21 0.24
72 66 0.74
73 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (72 bp):
AGAAGAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTCAAATTCATCACTTGATGGATCAA
CATTGCC
Found at i:59422 original size:184 final size:184
Alignment explanation
Indices: 59206--59553 Score: 499
Period size: 184 Copynumber: 1.9 Consensus size: 184
59196 TGAAGAATGA
* *
59206 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTT-AAATTCATCACTCGGTGGATC
1 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG-TTCAAATTCATCACTCGATGGATC
* * * * *
59270 AGCAGTGCTAGTTAGAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAG-AGTTCATAAT
65 AACAGTGCCAG-AAG-GTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCACAAT
*
59334 GAGAAGAACTTGTTCAA-CTTTTTGCTTGAATTC-ATCATTCGATGGATCAGCATTTCC
127 GAGAAGAACTTGCTCAACCTTTTTGCTTG-ATTCTATCATTCGATGGATCAGCATTTCC
* *
59391 AGAAG-AGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAAATTCATCACTTGATGGATCA
1 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTCAAATTCATCACTCGATGGATCA
* *
59455 ACATTGCCAGAAGGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCACAATGAGA
66 ACAGTGCCAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCACAATGAGA
*
59520 AGAGCTTGCTCAACCTTTTTGCTTGATTCTATCA
131 AGAACTTGCTCAACCTTTTTGCTTGATTCTATCA
59554 CAGAAAAAGA
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
181 9 0.06
182 54 0.37
183 19 0.13
184 59 0.40
185 5 0.03
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (184 bp):
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTCAAATTCATCACTCGATGGATCA
ACAGTGCCAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCACAATGAGA
AGAACTTGCTCAACCTTTTTGCTTGATTCTATCATTCGATGGATCAGCATTTCC
Found at i:59729 original size:113 final size:113
Alignment explanation
Indices: 59591--60123 Score: 464
Period size: 113 Copynumber: 4.7 Consensus size: 113
59581 TGCCAGGAAG
59591 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
** * *
59656 AATTTTTTGTTTGAATTCATCATTCGATGGATCATCATTTCAAAAG-AA
66 AACCTTTTGTTTGAATTCATCATTCGATGGATCAGCATTGC-AAAGTAA
* * *
59704 AGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* * * *
59769 AACCTTTTGTTTGAATTCATCATTTGATGGATCAGCATTGCCAGGTAG
66 AACCTTTTGTTTGAATTCATCATTCGATGGATCAGCATTGCAAAGTAA
* *
59817 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAATAAGTTCATAATGAGAAGAGCTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* ** * *** * * * *
59882 GACCTTTTGCAT-AACTCTATCAAAAGAAGGAGATATATCATCATCAGCATTTCCAG-AA
66 AACCTTTTGTTTGAATTC-ATCATTCG-ATG-G----ATCAGCAT-TGCA----AAGTAA
* *
59940 GGAGTTCACAATGAGAAGAACTCATCT---G-AAGAAGAAGAAGTTCATAATGAGAAGAGCTTGT
1 --AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGT
* ** * * *
60001 TCAACCTTTTGCTCAAATACATCACTT-GATGGATCAACATTTCCAGAAGGT--
64 TCAACCTTTTGTTTGAATTCATCA-TTCGATGGATCAGCA-TTGCA-AA-GTAA
* * *
60052 -GTTCATAATGAGAAGAACCCGTCTGAAG-AGGAAGAATG-AGTTCATAATGAGAAGAACTTGCT
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAA-GAAGTTCATAATGAGAAGAACTTG-T
60114 T-AACCTTTTG
64 TCAACCTTTTG
60124 CTAGATTTTA
Statistics
Matches: 345, Mismatches: 50, Indels: 51
0.77 0.11 0.11
Matches are distributed among these distances:
109 21 0.06
112 45 0.13
113 177 0.51
114 2 0.01
115 9 0.03
116 1 0.00
119 8 0.02
120 4 0.01
121 48 0.14
122 4 0.01
123 1 0.00
124 1 0.00
125 24 0.07
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (113 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
AACCTTTTGTTTGAATTCATCATTCGATGGATCAGCATTGCAAAGTAA
Found at i:59757 original size:532 final size:521
Alignment explanation
Indices: 58871--59891 Score: 1356
Period size: 532 Copynumber: 1.9 Consensus size: 521
58861 TGAAGAAAGA
* **
58871 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTGAATTCATTCGATGGATCAGTAT
1 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTAAATTCATTCGATGGATCAACAT
** *
58936 TACCAGGTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAA
66 TACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCACAATGAGAA
* * * *
59001 GAACTTGTTCAACTTTTCGTTTGAATTCATCACTAGATGGATTAACTTTTCCAGAGAGAGTTCAT
131 GAACTTGCTCAACTTTTCGCTTGAATTCATCACAAGATGGATCAACTTTTCCAGAGAGAGTTCAT
*
59066 AATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTT
196 AATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTT
* * *** * *
59131 TGCTTGAATTCATCATTCGATTGATCAGCAGTGCCAGTTAGAGTTCATAATTAGAAGAACTCATC
261 TGCTTGAATTCATCATTCGATGGATCAGCAGTGCAAAAGAAAGTTCATAATGAGAAGAACTCATC
* *
59196 TGAAGAATGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCACT
326 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACT
* * * * * *
59261 CGGTGGATCAGCAGTGCTAGTTAGAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAA-GA
391 CGATGGATCAGCAGTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAATAA
*
59325 GTTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATCATTCGATGGATCAGCATTTC
456 GTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATCAGCATTTC
59390 C
521 C
* * *
59391 AGAAG-AGTTCATAATGAGAAGAATTTGTTCAACCTTTT-GTTCAAATTCATCACTTGATGGATC
1 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCT-AAATTCAT---TCGATGGATC
* * *
59454 AACATTGCCA-GAAG-GTTCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCACAAT
61 AACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCACAAT
* * *
59516 GAGAAGAGCTTGCTCAACCTTTTTGCTTG-ATTCTATCACAGAAAAAGATTGATCAACATTAGCA
126 GAGAAGAACTTGCTCAA-CTTTTCGCTTGAATTC-ATCAC-----AAGATGGATCAAC-TT----
*
59580 TTGCCAG-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAG
179 TT-CCAGAG-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATAAG
* * * * *
59644 AAGAACTTGTTCAATTTTTTGTTTGAATTCATCATTCGATGGATCATCATTTCAAAAGAAAGTTC
242 AAGAACTTGTTCAACTTTTTGCTTGAATTCATCATTCGATGGATCAGCAGTGCAAAAGAAAGTTC
* *
59709 ATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCT
307 ATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCT
* * * * *
59774 TTTGTTTGAATTCATCATTTGATGGATCAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCA
372 TTTGCTTAAATTCATCACTCGATGGATCAGCAGTGCCAGGTAGAGTTCATAATGAGAAGAACTCA
* *
59839 TCTGAAGAAAGAAGAATAAGTTCATAATGAGAAGAGCTTGTTCGACCTTTTGC
437 TCTGAAGAAAGAAGAATAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
59892 ATAACTCTAT
Statistics
Matches: 430, Mismatches: 51, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
519 28 0.07
520 54 0.13
521 41 0.10
522 2 0.00
523 16 0.04
526 10 0.02
527 2 0.00
531 3 0.01
532 242 0.56
533 32 0.07
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (521 bp):
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTAAATTCATTCGATGGATCAACAT
TACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCACAATGAGAA
GAACTTGCTCAACTTTTCGCTTGAATTCATCACAAGATGGATCAACTTTTCCAGAGAGAGTTCAT
AATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTT
TGCTTGAATTCATCATTCGATGGATCAGCAGTGCAAAAGAAAGTTCATAATGAGAAGAACTCATC
TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTAAATTCATCACT
CGATGGATCAGCAGTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAATAA
GTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCATTCGATGGATCAGCATTTC
C
Found at i:60056 original size:109 final size:111
Alignment explanation
Indices: 59924--60125 Score: 302
Period size: 109 Copynumber: 1.8 Consensus size: 111
59914 ATATATCATC
* *
59924 ATCAGCATTTCCAGAAGGAGTTCACAATGAGAAGAACTCATCTGAAGAAGAAG-A-AGTTCATAA
1 ATCAACATTTCCAGAAGGAGTTCACAATGAGAAGAACCCATCTGAAGAAGAAGAAGAGTTCATAA
*
59987 TGAGAAGAGCTTG-TTCAACCTTTTGCTCAAATACATCACTTGATGG
66 TGAGAAGAACTTGCTT-AACCTTTTGCTCAAATACATCACTTGATGG
* * * *
60033 ATCAACATTTCCAGAAGGTGTTCATAATGAGAAGAACCCGTCTGAAGAGGAAGAATGAGTTCATA
1 ATCAACATTTCCAGAAGGAGTTCACAATGAGAAGAACCCATCTGAAGAAGAAGAA-GAGTTCATA
60098 ATGAGAAGAACTTGCTTAACCTTTTGCT
65 ATGAGAAGAACTTGCTTAACCTTTTGCT
60126 AGATTTTATC
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
109 47 0.57
110 1 0.01
112 32 0.39
113 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (111 bp):
ATCAACATTTCCAGAAGGAGTTCACAATGAGAAGAACCCATCTGAAGAAGAAGAAGAGTTCATAA
TGAGAAGAACTTGCTTAACCTTTTGCTCAAATACATCACTTGATGG
Found at i:60354 original size:3 final size:3
Alignment explanation
Indices: 60348--60411 Score: 101
Period size: 3 Copynumber: 20.3 Consensus size: 3
60338 TTTTTTATAT
60348 TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TTA
60395 TTA TTA TTA TTTA TTA T
1 TTA TTA TTA -TTA TTA T
60412 AAATTACAAG
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
3 49 0.84
4 9 0.16
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.