Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003637.1 Hibiscus syriacus cultivar Beakdansim tig00007703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72786
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:574 original size:110 final size:112
Alignment explanation
Indices: 1--719 Score: 1056
Period size: 110 Copynumber: 6.5 Consensus size: 112
*
1 GAACTCATCTGAAAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
1 GAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
* *
66 TCATTATTCGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
66 TCATCATTTGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
* *
113 GAACTCATCTGAAGAAAGAATAAGAAGTTCATAATGAGAAGAAC-GGTTCAACTTTTCGCTTGAA
1 GAACTCATCTGAAG-AAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAA
* *
177 TTCATCATTTGA-GGATCAGCATTACCAGGTCAAGTTCATAATGAGAA
65 TTCATCATTTGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
* **
224 GAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATGAGAAGAACGTGTTCAACTTTTTACTTGAA
1 GAACTCATCTGAAGAAG-AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAA
* *
289 TTCATCATTTGATGGATCAGCATTACCAGGTCAAGTTCATAATGAGAA
65 TTCATCATTTGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
*
337 GAACTCATCTGAAGAAAGAAGAAGAAGTTC---ATGAGAAGAACTTGTTCAACTTTTCACTTGAA
1 GAACTCATCTGAAG-AAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAA
399 TTCATCA--T--TGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
65 TTCATCATTTGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
443 GAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
1 GAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
*
508 TCATCATTTGAT-GATCA-CATTGCCAGGGCGAGTTCATAATGAGAA
66 TCATCATTTGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
* *
553 GAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAA-TTGTTCAACTTTTTGCTCGAAT
1 GAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
* * * * * *
617 TCATCACTCGATGGATCAACTTTTCCAGAG-AGAGTTCATATATGAGAA
66 TCATCATTTGATGGATCAGCATTGCCAG-GTCGAGTTCATA-ATGAGAA
*
665 GAA--CATCTGAAGAAGGAAGGAGAAGTTCATAATGAG-AGAACTTGTTCAATCTTTT
1 GAACTCATCTGAAGAA-GAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTT
720 GCATGATTCT
Statistics
Matches: 563, Mismatches: 25, Indels: 38
0.90 0.04 0.06
Matches are distributed among these distances:
105 15 0.03
106 48 0.09
108 39 0.07
109 30 0.05
110 130 0.23
111 121 0.21
112 88 0.16
113 89 0.16
114 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (112 bp):
GAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
TCATCATTTGATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAA
Found at i:988 original size:3 final size:3
Alignment explanation
Indices: 982--1046 Score: 91
Period size: 3 Copynumber: 22.0 Consensus size: 3
972 TTTTTTATAT
982 TTA TTA TTA TTA TTTA TTA TTA TTA TTA TT- TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1026 TTA TTA -TA TTA TTA TATA TTA
1 TTA TTA TTA TTA TTA T-TA TTA
1047 CAGGCCCAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
2 6 0.11
3 45 0.79
4 6 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1004 original size:19 final size:19
Alignment explanation
Indices: 982--1046 Score: 91
Period size: 19 Copynumber: 3.5 Consensus size: 19
972 TTTTTTATAT
982 TTATTATTATTATTTATTA
1 TTATTATTATTATTTATTA
1001 TTATTATTA-T-TTTATTA
1 TTATTATTATTATTTATTA
1018 TT-TTATTATTATTATATTA
1 TTATTATTATTATT-TATTA
1037 TTATATATTA
1 TTAT-TATTA
1047 CAGGCCCAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.15
17 10 0.24
18 3 0.07
19 16 0.39
20 1 0.02
21 5 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTATTATTATTTATTA
Found at i:1007 original size:22 final size:22
Alignment explanation
Indices: 982--1046 Score: 87
Period size: 25 Copynumber: 2.9 Consensus size: 22
972 TTTTTTATAT
982 TTATTATTATTATTTATTATTA
1 TTATTATTATTATTTATTATTA
1004 TTATTATTTTATTATTTTATTATTA
1 TTATTA--TTATTA-TTTATTATTA
*
1029 TTA-TATTATTATATATTA
1 TTATTATTATTATTTATTA
1047 CAGGCCCAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
21 6 0.15
22 12 0.31
24 8 0.21
25 13 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TTATTATTATTATTTATTATTA
Found at i:2544 original size:21 final size:21
Alignment explanation
Indices: 2520--2564 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2510 TTACATAAAT
*
2520 TATTTTTTTATCATATTTT-AA
1 TATTTATTTATCAT-TTTTCAA
*
2541 TATTTATTTATTATTTTTCAA
1 TATTTATTTATCATTTTTCAA
2562 TAT
1 TAT
2565 CAAAGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTTATTTATCATTTTTCAA
Found at i:4971 original size:15 final size:15
Alignment explanation
Indices: 4937--4969 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4927 AAACTTATTT
*
4937 TAAATTTATATAAGA
1 TAAATTTAAATAAGA
4952 TAAATTTAAATAA-A
1 TAAATTTAAATAAGA
4966 TAAA
1 TAAA
4970 ATCTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (15 bp):
TAAATTTAAATAAGA
Found at i:20183 original size:21 final size:23
Alignment explanation
Indices: 20159--20200 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
20149 ACCGAAAACA
20159 TGTCA-AAAGACAAAA-AAAATG
1 TGTCATAAAGACAAAAGAAAATG
*
20180 TGTCATAAAGATAAAAGAAAA
1 TGTCATAAAGACAAAAGAAAA
20201 CATTTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 9 0.50
23 4 0.22
ACGTcount: A:0.62, C:0.07, G:0.14, T:0.17
Consensus pattern (23 bp):
TGTCATAAAGACAAAAGAAAATG
Found at i:22179 original size:16 final size:16
Alignment explanation
Indices: 22158--22189 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22148 ATTCTGGTTC
22158 TGTCTATTTGGGTGAT
1 TGTCTATTTGGGTGAT
22174 TGTCTATTTGGGTGAT
1 TGTCTATTTGGGTGAT
22190 GATCGATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TGTCTATTTGGGTGAT
Found at i:39969 original size:15 final size:15
Alignment explanation
Indices: 39949--39998 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
39939 CCATAGGACC
39949 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
*
39964 ACTACGTTCCGAAGG
1 ACTACGTCCCGAAGG
* *
39979 TCTAAGTCCCGAAGG
1 ACTACGTCCCGAAGG
39994 ACTAC
1 ACTAC
39999 AATACCCTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.18
Consensus pattern (15 bp):
ACTACGTCCCGAAGG
Found at i:54015 original size:2 final size:2
Alignment explanation
Indices: 54008--54032 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
53998 ACTGCAAAAT
54008 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
54033 GCTACTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:56381 original size:40 final size:40
Alignment explanation
Indices: 56337--56497 Score: 322
Period size: 40 Copynumber: 4.0 Consensus size: 40
56327 TACATTGTAA
56337 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
1 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
56377 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
1 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
56417 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
1 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
56457 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
1 AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
56497 A
1 A
56498 TGCCTAATGC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.47
Consensus pattern (40 bp):
AACATATTATCTCTTTCTAGTTTCTTGGCCTTAGGTATAT
Found at i:60062 original size:13 final size:14
Alignment explanation
Indices: 60040--60067 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
60030 CAATTTATCC
60040 TTTTATTTTTTTTT
1 TTTTATTTTTTTTT
60054 TTTTATTTTTTTTT
1 TTTTATTTTTTTTT
60068 GAGGGGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTTATTTTTTTTT
Found at i:62112 original size:20 final size:20
Alignment explanation
Indices: 62089--62195 Score: 83
Period size: 20 Copynumber: 5.3 Consensus size: 20
62079 GTTTCCAGAT
62089 TCGCAATGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* * *
62109 TCGCATTGCGATTTTCCGAAT-
1 TCGCAATGCGA--TTCTGACTA
* * *
62130 TCGCAATGCGAATATGTA-AA
1 TCGCAATGCGATTCTG-ACTA
* *
62150 TTGCAATGCGATTCTTACTA
1 TCGCAATGCGATTCTGACTA
* *
62170 TCGCAACGCGATTCTGACTG
1 TCGCAATGCGATTCTGACTA
62190 TCGCAA
1 TCGCAA
62196 CACTGAATTT
Statistics
Matches: 65, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
19 3 0.05
20 46 0.71
21 10 0.15
22 6 0.09
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (20 bp):
TCGCAATGCGATTCTGACTA
Found at i:65648 original size:140 final size:140
Alignment explanation
Indices: 65396--65665 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
65386 AAACGTTGTA
65396 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
65461 TGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
65526 TATGTGTATT
131 TATGTGTATT
65536 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
* *
65601 TGATATGTTCAGTTGTTATCACTTATTGCTCATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
65666 CGCAACGCAA
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:65661 original size:20 final size:20
Alignment explanation
Indices: 65636--65781 Score: 153
Period size: 20 Copynumber: 7.7 Consensus size: 20
65626 TTGCTCATTC
*
65636 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
65656 ATTTGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
* *
65675 A----A-AATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
*
65690 ATTTGTCTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
65710 ATTTGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
* * *
65730 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
*
65750 ATTTGACTATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
*
65770 A-TTGACTTTCGC
1 ATTTGACTATCGC
65782 GTTGCGATTT
Statistics
Matches: 105, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
14 10 0.10
15 3 0.03
19 12 0.11
20 80 0.76
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:65683 original size:14 final size:14
Alignment explanation
Indices: 65664--65690 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65654 GAATTTGACT
65664 ATCGCAACGCAAAA
1 ATCGCAACGCAAAA
65678 ATCGCAACGCAAA
1 ATCGCAACGCAAA
65691 TTTGTCTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (14 bp):
ATCGCAACGCAAAA
Found at i:65987 original size:14 final size:14
Alignment explanation
Indices: 65927--65988 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
65917 CACAAATAAG
*
65927 AATTATTTACATATC
1 AATT-TTTACAAATC
**
65942 AATATTAAACAAATC
1 AAT-TTTTACAAATC
*
65957 AACTTTTACAAATC
1 AATTTTTACAAATC
*
65971 AATTTTTATAAATC
1 AATTTTTACAAATC
65985 AATT
1 AATT
65989 AAACAAGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 12 0.32
16 1 0.03
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:68003 original size:18 final size:19
Alignment explanation
Indices: 67977--68019 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
67967 CTTAAAATCG
*
67977 CAACACGAA-TGACTATCA
1 CAACGCGAATTGACTATCA
*
67995 CAACGCGAATTTGACTATCG
1 CAACGCGAA-TTGACTATCA
68015 CAACG
1 CAACG
68020 AGAGAATCGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
20 13 0.62
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (19 bp):
CAACGCGAATTGACTATCA
Found at i:68328 original size:20 final size:20
Alignment explanation
Indices: 68303--68347 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
68293 TTTACTTTCG
68303 CAACGCGAAA-ATGACTATCA
1 CAACGC-AAATATGACTATCA
* *
68323 CAACGCAAATTTGACTATCG
1 CAACGCAAATATGACTATCA
68343 CAACG
1 CAACG
68348 AGAGAATCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.18
Consensus pattern (20 bp):
CAACGCAAATATGACTATCA
Found at i:68588 original size:18 final size:18
Alignment explanation
Indices: 68565--68614 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
68555 TTTACTAAGC
68565 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
*
68583 AATCTAAGTGAAACGGTT
1 AATCTAAGTGAAATGGTT
*
68601 AATCTAAGTAAAAT
1 AATCTAAGTGAAAT
68615 TACGAGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.30
Consensus pattern (18 bp):
AATCTAAGTGAAATGGTT
Found at i:70386 original size:20 final size:20
Alignment explanation
Indices: 70343--70416 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
70333 GAAACTTAAA
* **
70343 ATCGCAACACGAAAATAAAA
1 ATCGCAACACGAAAATGACT
70363 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
* **
70383 ATCGCAACGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
*
70403 ATCGCAACGCGAAA
1 ATCGCAACACGAAA
70417 TGAAAATCGC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.45, C:0.24, G:0.16, T:0.15
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:70839 original size:22 final size:22
Alignment explanation
Indices: 70812--70854 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
70802 GAGATAGATG
70812 GATTTCGCCGGAGATGGGGACT
1 GATTTCGCCGGAGATGGGGACT
*
70834 GATTTCGTCGGAGATGGGGAC
1 GATTTCGCCGGAGATGGGGAC
70855 GGATGTCACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.16, G:0.42, T:0.23
Consensus pattern (22 bp):
GATTTCGCCGGAGATGGGGACT
Found at i:71059 original size:20 final size:20
Alignment explanation
Indices: 71029--71146 Score: 148
Period size: 20 Copynumber: 5.9 Consensus size: 20
71019 GCGCTTTGAA
71029 AATCGCATTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* *
71049 CATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* *
71069 AATCTCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
*
71089 AATCGCATTGCGATAGTCAT
1 AATCGCATTGCGATAGTCAG
* *
71109 AATCGCATTGCGAT-TTACAT
1 AATCGCATTGCGATAGT-CAG
*
71129 ATTCGCATTGCGATAGTC
1 AATCGCATTGCGATAGTC
71147 GGAAAACCGC
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
19 1 0.01
20 84 0.98
21 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (20 bp):
AATCGCATTGCGATAGTCAG
Done.