genome.fa.s3638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003638.1 Hibiscus syriacus cultivar Beakdansim tig00007708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39111

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575--642	20	3.5	19	82	6	82	38	23	23	14	1.92
631--688	14	3.9	14	79	16	71	48	25	17	8	1.75
615--693	32	2.4	33	95	2	142	46	24	18	10	1.80
700--776	32	2.4	32	91	2	127	15	18	20	45	1.85
761--814	19	2.8	19	88	2	72	16	22	24	37	1.94
1292--1336	18	2.5	18	92	0	72	15	15	42	26	1.87
2645--2682	20	1.9	20	88	0	58	50	21	15	13	1.78
3177--3249	20	3.7	20	92	0	110	28	16	30	24	1.96
3157--3291	20	6.7	20	79	10	98	25	16	25	31	1.96
3157--3292	41	3.3	41	74	13	145	25	16	25	32	1.96
3280--3372	20	4.5	21	78	4	100	17	24	18	39	1.91
3280--3372	41	2.3	41	100	0	150	17	24	18	39	1.91
6369--7202	128	6.5	128	93	1	1469	21	24	20	33	1.97
7564--7667	28	3.5	28	75	15	93	37	3	4	53	1.40
7592--7664	34	2.1	34	87	0	101	32	2	4	60	1.30
8186--8258	21	3.5	21	85	7	103	21	26	34	17	1.96
13132--13275	76	1.9	77	86	1	209	49	18	9	22	1.76
14439--14477	21	2.0	21	85	10	55	38	2	7	51	1.44
14689--14732	22	2.1	20	87	8	61	56	27	0	15	1.40
17458--17615	78	2.0	79	95	2	284	44	8	17	29	1.78
19031--19128	20	4.8	20	69	10	65	51	7	12	29	1.66
20594--20634	21	1.9	22	85	5	57	41	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22421--22447	13	2.1	13	100	0	54	14	22	14	48	1.81
23949--24015	30	2.2	30	84	5	82	14	25	22	37	1.93
24985--25041	29	2.0	29	89	0	87	17	36	24	21	1.94
25184--25241	29	2.0	29	86	6	82	24	22	36	17	1.95

Tables:   1

The End!