Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003639.1 Hibiscus syriacus cultivar Beakdansim tig00007711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104663

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8296--8326
16
1.9
16
100
0
62
58
22
12
6
1.58
8394--8458
16
4.1
16
91
0
112
58
23
10
7
1.57
8412--8462
26
2.0
26
84
7
68
60
19
9
9
1.55
9552--9604
14
4.1
14
81
18
78
50
26
15
7
1.70
9544--9603
24
2.5
24
94
0
102
53
25
11
10
1.68
12911--12984
33
2.2
33
97
0
139
54
22
10
12
1.68
14298--14460
84
1.9
84
80
4
186
42
20
25
10
1.84
18618--18673
15
3.7
15
71
15
53
50
1
7
41
1.40
21863--21914
24
2.2
24
100
0
104
25
30
15
28
1.96
22462--22499
3
12.3
3
94
5
67
34
0
2
63
1.09
22630--22667
18
2.2
18
85
4
51
44
7
0
47
1.32
23062--23109
2
24.0
2
95
0
87
47
0
2
50
1.12
24539--24588
25
2.0
26
84
4
66
22
16
18
44
1.87
45326--45368
16
2.7
16
96
0
77
60
18
2
18
1.47
46481--46830
51
6.6
54
86
5
259
29
25
15
29
1.96
46461--46830
102
3.5
106
82
8
337
30
25
15
29
1.96
46588--46846
51
5.0
51
91
1
383
28
26
15
29
1.96
47977--48096
17
7.1
17
72
17
90
7
13
0
78
1.00
47983--48080
9
10.6
9
70
23
62
9
12
0
78
0.96
47992--48096
46
2.3
46
79
14
110
7
12
0
79
0.99
47981--48044
8
7.9
8
73
16
60
6
14
0
79
0.91
47971--48103
9
14.3
9
68
20
60
8
13
0
77
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57668--57756
45
1.9
47
90
4
146
38
22
11
28
1.88
59744--59786
16
2.7
16
96
0
77
60
18
2
18
1.47
68068--68131
19
3.2
20
72
14
53
43
1
1
53
1.19
68077--68126
20
2.5
20
78
12
59
40
2
2
56
1.22
68044--68130
31
2.8
30
79
10
95
41
1
3
54
1.25
68320--68399
11
7.7
10
71
17
56
52
3
0
43
1.19
68313--68399
31
2.8
30
83
10
104
54
3
0
42
1.17
68317--68366
19
2.5
21
84
9
70
56
2
0
42
1.11
69424--69591
31
5.4
31
97
0
309
43
16
13
27
1.84
74082--74125
23
1.9
23
85
0
61
56
0
2
40
1.11
78721--79044
161
2.0
160
98
0
621
45
9
4
39
1.57
79294--79336
20
2.3
19
88
11
70
23
30
9
37
1.86
79299--79336
20
1.9
20
100
0
76
23
28
10
36
1.88
80076--80129
25
2.1
25
83
10
65
59
0
7
33
1.25
80141--80188
18
2.6
18
86
3
60
12
4
10
72
1.24
80393--80424
16
2.0
16
100
0
64
31
0
43
25
1.55
80558--80593
15
2.3
16
90
4
56
25
5
8
61
1.46
80593--80757
84
2.0
84
92
0
276
24
15
13
46
1.82
80805--80852
21
2.3
21
81
0
60
39
0
2
58
1.10
80866--80910
18
2.3
20
75
20
51
44
17
0
37
1.49
81045--81089
15
3.1
15
93
3
74
51
28
0
20
1.48
82975--83075
22
4.5
22
70
20
82
50
8
0
40
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83020--83105
15
5.3
15
77
18
75
48
3
0
47
1.18
82994--83107
47
2.3
49
83
10
135
48
5
0
46
1.24
82994--83135
52
3.0
47
78
14
150
47
5
0
47
1.26
89350--89487
59
2.3
58
84
7
170
53
2
7
36
1.41
90672--90696
3
8.3
3
100
0
50
32
0
0
68
0.90
98337--98438
50
2.0
51
98
1
197
28
17
15
38
1.91
99842--99881
18
2.2
19
86
4
55
45
10
2
42
1.51

Tables:   1

The End!