Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003640.1 Hibiscus syriacus cultivar Beakdansim tig00007712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96877

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1517--1777
66
4.0
65
89
4
393
31
18
24
26
1.97
8707--8782
27
2.8
27
100
0
152
30
18
3
47
1.67
16040--16071
15
2.0
17
88
11
50
50
3
0
46
1.17
21270--21301
2
16.0
2
100
0
64
50
0
0
50
1.00
21376--21415
21
2.0
21
85
5
55
40
5
22
32
1.76
25028--25095
3
22.7
3
100
0
136
67
0
0
32
0.91
27171--27195
3
8.3
3
100
0
50
0
32
0
68
0.90
28443--28599
35
4.4
36
88
4
221
43
18
5
33
1.72
28463--28626
70
2.3
69
83
7
188
42
17
6
33
1.76
32659--32690
16
2.0
16
93
0
55
34
18
6
40
1.76
33087--33205
35
3.3
36
85
5
161
43
19
3
33
1.67
33090--33233
72
2.1
68
83
10
175
41
18
5
34
1.73
33089--33233
35
4.1
36
79
13
124
41
17
5
35
1.73
35159--35188
12
2.6
11
90
10
51
53
0
0
46
1.00
42977--43014
3
12.3
3
88
5
58
36
0
0
63
0.95
47866--47909
9
4.9
9
89
10
72
43
0
0
56
0.99
47862--47909
18
2.7
18
93
6
80
45
0
0
54
0.99
52395--52441
23
2.1
22
88
4
67
29
6
25
38
1.81
54293--54330
17
2.3
17
86
4
51
18
21
31
28
1.97
54539--54574
16
2.3
15
90
4
54
52
5
0
41
1.24
70062--70090
14
2.1
14
100
0
58
34
27
6
31
1.83
75493--75542
24
2.0
24
81
11
57
48
8
2
42
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78059--78098
18
2.2
19
86
4
55
42
2
10
45
1.51
79532--79633
50
2.0
51
98
1
197
38
15
17
28
1.91
81539--81594
21
2.6
22
80
11
62
44
3
1
50
1.29
88492--88629
59
2.3
58
84
7
170
36
7
2
53
1.41
94811--94894
14
5.4
15
75
15
64
47
0
3
48
1.19
94812--94920
46
2.3
46
81
12
130
45
0
5
48
1.25
96756--96798
13
3.1
14
90
6
61
20
0
30
48
1.50

Tables:   1

The End!