Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003642.1 Hibiscus syriacus cultivar Beakdansim tig00007735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111532
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3977 original size:23 final size:21
Alignment explanation
Indices: 3926--3982 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
3916 TTTTAATTTC
*
3926 TTTTATTTATTTATGGTAATT
1 TTTTATTTTTTTATGGTAATT
***
3947 TAAGATTTTTATTATGGTAGATT
1 TTTTATTTTT-TTATGGTA-ATT
3970 TTTTATTTTTTTA
1 TTTTATTTTTTTA
3983 ATTAGTGTAT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
21 6 0.22
22 11 0.41
23 10 0.37
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.65
Consensus pattern (21 bp):
TTTTATTTTTTTATGGTAATT
Found at i:33376 original size:15 final size:15
Alignment explanation
Indices: 33356--33395 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
33346 GTAGTAATGA
33356 AAATTTGAAAGTGGC
1 AAATTTGAAAGTGGC
33371 AAATTTGAAAGTGGC
1 AAATTTGAAAGTGGC
33386 AAATTTGAAA
1 AAATTTGAAA
33396 AAGGTGAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.28
Consensus pattern (15 bp):
AAATTTGAAAGTGGC
Found at i:35142 original size:10 final size:10
Alignment explanation
Indices: 35127--35158 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
35117 ACCTCAATTG
35127 TAGCTGAATA
1 TAGCTGAATA
*
35137 TAGCTGAATG
1 TAGCTGAATA
35147 TAGCTGAATA
1 TAGCTGAATA
35157 TA
1 TA
35159 CTGCTATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (10 bp):
TAGCTGAATA
Found at i:35171 original size:20 final size:20
Alignment explanation
Indices: 35128--35171 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
35118 CCTCAATTGT
*
35128 AGCTGAATATAGCTGAATGT
1 AGCTGAATATAGCTGAATGA
*
35148 AGCTGAATATA-CTGCTATGA
1 AGCTGAATATAGCTG-AATGA
35168 AGCT
1 AGCT
35172 TGGGAGGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (20 bp):
AGCTGAATATAGCTGAATGA
Found at i:36535 original size:23 final size:23
Alignment explanation
Indices: 36504--36552 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
36494 TTTCAGATGC
*
36504 ATTTTGAAAGTATTTTTATAATA
1 ATTTCGAAAGTATTTTTATAATA
*
36527 ATTTCGAAAGTATTTTTATAGTA
1 ATTTCGAAAGTATTTTTATAATA
36550 ATT
1 ATT
36553 GTGATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (23 bp):
ATTTCGAAAGTATTTTTATAATA
Found at i:36580 original size:15 final size:15
Alignment explanation
Indices: 36560--36589 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36550 ATTGTGATAA
36560 ATATTATAAATTTTT
1 ATATTATAAATTTTT
36575 ATATTATAAATTTTT
1 ATATTATAAATTTTT
36590 GTGTAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTATAAATTTTT
Found at i:37307 original size:21 final size:22
Alignment explanation
Indices: 37259--37307 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
37249 CTCATTTTAT
*
37259 TAAAACATAAATCAGATACGAA
1 TAAAATATAAATCAGATACGAA
* **
37281 TCAAATATAAATGTGAT-CGAA
1 TAAAATATAAATCAGATACGAA
37302 TAAAAT
1 TAAAAT
37308 GACCAAACCA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.24
Consensus pattern (22 bp):
TAAAATATAAATCAGATACGAA
Found at i:37409 original size:25 final size:25
Alignment explanation
Indices: 37375--37439 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
37365 TAAAATAGTT
37375 TAATTACAATATTTTTTTGTTACAA
1 TAATTACAATATTTTTTTGTTACAA
37400 TAATTACAATATTTTTTTGTTACAA
1 TAATTACAATATTTTTTTGTTACAA
*
37425 TAATCACAATATTTT
1 TAATTACAATATTTT
37440 GACAAATCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (25 bp):
TAATTACAATATTTTTTTGTTACAA
Found at i:41287 original size:61 final size:61
Alignment explanation
Indices: 41185--41300 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 61
41175 TAGTGATAGT
* ** * * *
41185 ATTGTTCCTTCGTGTTGAGGAAATCTGATTATCTAAAGATAATTTGATTTTTGAAAATGGC
1 ATTGCTCCTTCGCATTGAGGAAATCTAATTACCTAAAGATAATTTGATTATTGAAAATGGC
* ** *
41246 ATTGCTCCTTCGCATTGAGGAGATCTAATTACCTTTAGATAATTTGCTTATTGAA
1 ATTGCTCCTTCGCATTGAGGAAATCTAATTACCTAAAGATAATTTGATTATTGAA
41301 GACAACATTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 45 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (61 bp):
ATTGCTCCTTCGCATTGAGGAAATCTAATTACCTAAAGATAATTTGATTATTGAAAATGGC
Found at i:56759 original size:23 final size:23
Alignment explanation
Indices: 56728--56780 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
56718 AAATTTATGG
* * *
56728 TCTTTACTCATTCGAGCAAATTT
1 TCTTCACTCATACGAGAAAATTT
56751 TCTTCACTCATACGAGAAAATTT
1 TCTTCACTCATACGAGAAAATTT
*
56774 CCTTCAC
1 TCTTCAC
56781 CTTGCCCCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (23 bp):
TCTTCACTCATACGAGAAAATTT
Found at i:57920 original size:6 final size:6
Alignment explanation
Indices: 57903--57945 Score: 52
Period size: 6 Copynumber: 6.8 Consensus size: 6
57893 TTACTTAAAT
57903 AAATGC -AATGC AAATGC AAATGC AAAATGC AAAGATGC AAATG
1 AAATGC AAATGC AAATGC AAATGC -AAATGC -AA-ATGC AAATG
57946 ATGATGTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.15
6 14 0.41
7 11 0.32
8 4 0.12
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (6 bp):
AAATGC
Found at i:62748 original size:2 final size:2
Alignment explanation
Indices: 62741--62767 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
62731 CATACAAAGA
62741 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
62768 CTACAGTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64140 original size:2 final size:2
Alignment explanation
Indices: 64133--64168 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
64123 ATTTAATAAT
64133 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64169 ATACTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:65911 original size:28 final size:28
Alignment explanation
Indices: 65880--65942 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
65870 TCGCATCGTA
*
65880 ATATATACATACGTGTGTGTATATGTAT
1 ATATATACATACGTGTGTGTATATATAT
65908 ATATATACATACGTGTGTGTATATATAT
1 ATATATACATACGTGTGTGTATATATAT
*
65936 ACATATA
1 ATATATA
65943 ACCAATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (28 bp):
ATATATACATACGTGTGTGTATATATAT
Found at i:73224 original size:18 final size:18
Alignment explanation
Indices: 73201--73239 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
73191 TTATGATTAG
73201 AATAAGGATTT-TGCAAAT
1 AATAAGG-TTTATGCAAAT
*
73219 AATAAGGTTTATGCAAGT
1 AATAAGGTTTATGCAAAT
73237 AAT
1 AAT
73240 GCTAACTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.33
Consensus pattern (18 bp):
AATAAGGTTTATGCAAAT
Found at i:80624 original size:18 final size:19
Alignment explanation
Indices: 80591--80628 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
80581 TTTTAAATCT
80591 TTATTTTCAAATTCATAAC
1 TTATTTTCAAATTCATAAC
*
80610 TTATTTT-AGATTCATAAC
1 TTATTTTCAAATTCATAAC
80628 T
1 T
80629 CCTTTTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (19 bp):
TTATTTTCAAATTCATAAC
Found at i:80634 original size:18 final size:19
Alignment explanation
Indices: 80601--80652 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
80591 TTATTTTCAA
*
80601 ATTCATAACTTA-TTTTAG
1 ATTCATAACTCATTTTTAG
* *
80619 ATTCATAACTCCTTTTTGG
1 ATTCATAACTCATTTTTAG
*
80638 ATTCATAGCTCATTT
1 ATTCATAACTCATTT
80653 CCAGATTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 10 0.36
19 18 0.64
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.48
Consensus pattern (19 bp):
ATTCATAACTCATTTTTAG
Found at i:85123 original size:19 final size:19
Alignment explanation
Indices: 85099--85150 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
85089 TCCAGACCAT
85099 AAGTTTCAAAACTTCTGGA
1 AAGTTTCAAAACTTCTGGA
85118 AAGTTTCAAAACTTCTGGA
1 AAGTTTCAAAACTTCTGGA
*
85137 AAGTTTCTAAACTT
1 AAGTTTCAAAACTT
85151 TTGGGAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (19 bp):
AAGTTTCAAAACTTCTGGA
Found at i:88279 original size:25 final size:25
Alignment explanation
Indices: 88250--88307 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
88240 TACGTATAAT
* *
88250 TTAATAAAGTAATAATGATTAATT-A
1 TTAATAAAATAATAAT-AATAATTAA
*
88275 TTAATAAAATAATAATAATGATTAA
1 TTAATAAAATAATAATAATAATTAA
88300 TTAATAAA
1 TTAATAAA
88308 TTATTATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (25 bp):
TTAATAAAATAATAATAATAATTAA
Found at i:89156 original size:13 final size:13
Alignment explanation
Indices: 89138--89164 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89128 TGTGCCGCGC
89138 AGACCACGCATAG
1 AGACCACGCATAG
89151 AGACCACGCATAG
1 AGACCACGCATAG
89164 A
1 A
89165 CATTGAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.30, G:0.22, T:0.07
Consensus pattern (13 bp):
AGACCACGCATAG
Found at i:89303 original size:12 final size:12
Alignment explanation
Indices: 89286--89336 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
89276 CTTCAAAATG
89286 TTTTATATTTAA
1 TTTTATATTTAA
89298 TTTTATA-TTATA
1 TTTTATATTTA-A
*
89310 TTTGAT-TTTAA
1 TTTTATATTTAA
89321 TTTTA-ATATTAA
1 TTTTATAT-TTAA
89333 TTTT
1 TTTT
89337 TTAAATAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 9 0.27
12 24 0.73
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:89352 original size:24 final size:27
Alignment explanation
Indices: 89319--89541 Score: 147
Period size: 24 Copynumber: 8.7 Consensus size: 27
89309 ATTTGATTTT
*
89319 AATTTTAATATTAATTTTTTAA-A-TA
1 AATTATAATATTAATTTTTTAATATTA
89344 AATTA-AATATTAATTTTTTAATATTA
1 AATTATAATATTAATTTTTTAATATTA
*
89370 TATTATAGATATTAA--TTTTAATATTA
1 AATTATA-ATATTAATTTTTTAATATTA
* * * *
89396 ATTTTTTAA-A-TAA--ATTAAATATTA
1 A-ATTATAATATTAATTTTTTAATATTA
* * * *
89420 ATTTTTTAATATT-ATATTATAGATATT-
1 A-ATTATAATATTAATTTTTTA-ATATTA
* **
89447 AATTTTAATATTAA-TTTTTAA-AAAA
1 AATTATAATATTAATTTTTTAATATTA
89472 AATTA-AATATTAATTTTTTAA-A-TA
1 AATTATAATATTAATTTTTTAATATTA
89496 AATTA-AATATTAATTTTTTAATATTA
1 AATTATAATATTAATTTTTTAATATTA
*
89522 TATTATAGATATTTAATTTT
1 AATTATA-ATA-TTAATTTT
89542 ATATCATATA
Statistics
Matches: 162, Mismatches: 18, Indels: 32
0.76 0.08 0.15
Matches are distributed among these distances:
24 68 0.42
25 22 0.14
26 39 0.24
27 10 0.06
28 15 0.09
29 8 0.05
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
AATTATAATATTAATTTTTTAATATTA
Found at i:89395 original size:12 final size:12
Alignment explanation
Indices: 89294--89464 Score: 111
Period size: 12 Copynumber: 13.7 Consensus size: 12
89284 TGTTTTATAT
89294 TTAATTTT-ATA
1 TTAATTTTAATA
* *
89305 TT-ATATTTGATT
1 TTAAT-TTTAATA
89317 TTAATTTTAATA
1 TTAATTTTAATA
89329 TTAATTTTTTAA-A
1 TTAA--TTTTAATA
* *
89342 -TAAATTAAATA
1 TTAATTTTAATA
89353 TTAATTTTTTAATA
1 TTAA--TTTTAATA
*
89367 TTATATTATAGATA
1 TTA-ATTTTA-ATA
89381 TTAATTTTAATA
1 TTAATTTTAATA
89393 TTAATTTTTTAA-A
1 TTAA--TTTTAATA
* *
89406 -TAAATTAAATA
1 TTAATTTTAATA
89417 TTAATTTTTTAATA
1 TTAA--TTTTAATA
*
89431 TTATATTATAGATA
1 TTA-ATTTTA-ATA
89445 TTAATTTTAATA
1 TTAATTTTAATA
89457 TTAATTTT
1 TTAATTTT
89465 TAAAAAAAAT
Statistics
Matches: 126, Mismatches: 15, Indels: 37
0.71 0.08 0.21
Matches are distributed among these distances:
10 10 0.08
11 7 0.06
12 43 0.34
13 22 0.17
14 42 0.33
15 2 0.02
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (12 bp):
TTAATTTTAATA
Found at i:89396 original size:64 final size:64
Alignment explanation
Indices: 89298--89521 Score: 345
Period size: 64 Copynumber: 3.6 Consensus size: 64
89288 TTATATTTAA
*
89298 TTTT-ATATTATATT-T-GATTTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATT
1 TTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATT
89359 TTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATT
1 TTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATT
* *
89423 TTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTAAAAAAAATTAAATATTAATT
1 TTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATT
*
89487 TTTTAA-A-TAAATTA-A-ATATTAATTTTTTAATATTA
1 TTTTAATATTATATTATAGATATTAA--TTTTAATATTA
89522 TATTATAGAT
Statistics
Matches: 154, Mismatches: 4, Indels: 9
0.92 0.02 0.05
Matches are distributed among these distances:
60 7 0.05
61 5 0.03
62 27 0.18
63 2 0.01
64 113 0.73
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (64 bp):
TTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATT
Found at i:89572 original size:88 final size:87
Alignment explanation
Indices: 89325--89542 Score: 291
Period size: 88 Copynumber: 2.5 Consensus size: 87
89315 TTTTAATTTT
* ** *
89325 AATATTAATTTTTTAA-A-TAAATTA-A-ATATTAATTTTTTAATATTATATTATAGATATTAAT
1 AATATTAATTTTTTAATATTATATTATAGATATTAA--TTTTAATATTA-ATTATA-A-AAAAAA
*
89386 TTTAATATTAATTTTTTAAATAAATTA
61 TTAAATATTAATTTTTTAAATAAATTA
*
89413 AATATTAATTTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTAAAAAAAATTAA
1 AATATTAATTTTTTAATATTATATTATAGATATTAATTTTAATATTAA-TTATAAAAAAAATTAA
89478 ATATTAATTTTTTAAATAAATTA
65 ATATTAATTTTTTAAATAAATTA
89501 AATATTAATTTTTTAATATTATATTATAGATATTTAATTTTA
1 AATATTAATTTTTTAATATTATATTATAGATA-TTAATTTTA
89543 TATCATATAA
Statistics
Matches: 118, Mismatches: 6, Indels: 11
0.87 0.04 0.08
Matches are distributed among these distances:
88 77 0.65
89 12 0.10
90 21 0.18
91 1 0.01
92 7 0.06
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (87 bp):
AATATTAATTTTTTAATATTATATTATAGATATTAATTTTAATATTAATTATAAAAAAAATTAAA
TATTAATTTTTTAAATAAATTA
Found at i:89597 original size:20 final size:19
Alignment explanation
Indices: 89537--89598 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
89527 TAGATATTTA
*
89537 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
89556 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
89574 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
89594 ATTTT
1 ATTTT
89599 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:90104 original size:31 final size:31
Alignment explanation
Indices: 90067--90126 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
90057 TAGTTGTATG
* *
90067 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
90098 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTGCAAAACT
90127 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:94232 original size:52 final size:52
Alignment explanation
Indices: 94171--94274 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
94161 AAGTTTTCTC
94171 CCTTTCATTCAAATAGGCAGTTTGATGATTTATTATGTACAACAAGCAAAAA
1 CCTTTCATTCAAATAGGCAGTTTGATGATTTATTATGTACAACAAGCAAAAA
*
94223 CCTTTCATTCAAGTAGGCAGTTTGATGATTTATTATGTACAACAAGCAAAAA
1 CCTTTCATTCAAATAGGCAGTTTGATGATTTATTATGTACAACAAGCAAAAA
94275 GAAAATCTCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (52 bp):
CCTTTCATTCAAATAGGCAGTTTGATGATTTATTATGTACAACAAGCAAAAA
Found at i:100127 original size:15 final size:14
Alignment explanation
Indices: 100091--100134 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
100081 AGTAACATGG
*
100091 ACTAAAACATAATA-
1 ACTAAAA-ATAAAAT
100105 ACTGAAAAATAAAAT
1 ACT-AAAAATAAAAT
100120 ACTAAAAATAAAAT
1 ACTAAAAATAAAAT
100134 A
1 A
100135 ATATGGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 20 0.74
15 7 0.26
ACGTcount: A:0.68, C:0.09, G:0.02, T:0.20
Consensus pattern (14 bp):
ACTAAAAATAAAAT
Found at i:101190 original size:3 final size:3
Alignment explanation
Indices: 101182--101231 Score: 75
Period size: 3 Copynumber: 16.3 Consensus size: 3
101172 TAAACAAAAT
101182 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA GT-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA -TAA TAA
101228 TAA T
1 TAA T
101232 TTAAGACCGG
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 1 0.02
3 39 0.89
4 4 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:102616 original size:13 final size:13
Alignment explanation
Indices: 102583--102779 Score: 103
Period size: 13 Copynumber: 14.3 Consensus size: 13
102573 ATAATATATA
*
102583 TATATGATATAAAA
1 TATAT-ATATAAAC
102597 T-TATATATAAAC
1 TATATATATAAAC
*
102609 TATATATATAAAT
1 TATATATATAAAC
* *
102622 TATATTTATGTGAAC
1 TATA--TATATAAAC
*
102637 TATATATATAAAA
1 TATATATATAAAC
* *
102650 TATGTATATAAAA
1 TATATATATAAAC
* *
102663 T-TATAAACTATA-
1 TATATATA-TAAAC
*
102675 TTTATATTATAAAC
1 TATATA-TATAAAC
102689 TATATAATTATTATAAGC
1 TATAT-A-TA-TA-AA-C
*
102707 TATATATATAAAT
1 TATATATATAAAC
* * * *
102720 TATGTTTATGTGAAT
1 TA--TATATATAAAC
102735 TATATATATAAAC
1 TATATATATAAAC
*
102748 TATGTATATAAAC
1 TATATATATAAAC
102761 TATATATGTATAAAC
1 TATATA--TATAAAC
102776 TATA
1 TATA
102780 AAAAGTATAT
Statistics
Matches: 143, Mismatches: 25, Indels: 29
0.73 0.13 0.15
Matches are distributed among these distances:
12 13 0.09
13 72 0.50
14 8 0.06
15 37 0.26
16 4 0.03
17 3 0.02
18 6 0.04
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:102616 original size:15 final size:15
Alignment explanation
Indices: 102581--102877 Score: 105
Period size: 15 Copynumber: 19.4 Consensus size: 15
102571 ATATAATATA
102581 TATATATGATATAAA-
1 TATATAT-ATATAAAC
102596 -AT-TATATATAAAC
1 TATATATATATAAAC
*
102609 --TATATATATAAAT
1 TATATATATATAAAC
* * *
102622 TATATTTATGTGAAC
1 TATATATATATAAAC
* *
102637 TATATATATAAAATATG
1 TATATATATATAA-A-C
*
102654 TATATAAAATTATAAAC
1 TATAT-ATA-TATAAAC
102671 TATATTTATATTATAAAC
1 TATA--TATA-TATAAAC
*
102689 TATATAATTATTATAAGC
1 TATAT-A-TA-TATAAAC
*
102707 --TATATATATAAAT
1 TATATATATATAAAC
* * * *
102720 TATGTTTATGTGAA-
1 TATATATATATAAAC
102734 T-TATATATATAAAC
1 TATATATATATAAAC
*
102748 --TATGTATATAAAC
1 TATATATATATAAAC
*
102761 TATATATGTATAAAC
1 TATATATATATAAAC
*
102776 TATAAAAAGTATATAAAC
1 TAT--ATA-TATATAAAC
* * * *
102794 TATAAAAATTATATAG
1 TATATATA-TATAAAC
* * * **
102810 TTTATAAATATTATT
1 TATATATATATAAAC
*
102825 TATATTAATATAGTATA-
1 TATA-T-ATATA-TAAAC
102842 TATATATATATAAAC
1 TATATATATATAAAC
*
102857 TATATATGTATAAAC
1 TATATATATATAAAC
102872 TATATA
1 TATATA
102878 AAGTATATAG
Statistics
Matches: 211, Mismatches: 46, Indels: 50
0.69 0.15 0.16
Matches are distributed among these distances:
12 8 0.04
13 38 0.18
14 8 0.04
15 73 0.35
16 21 0.10
17 20 0.09
18 38 0.18
19 5 0.02
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.43
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:102625 original size:11 final size:11
Alignment explanation
Indices: 102577--102626 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
102567 AAAAATATAA
*
102577 TATATATATAT
1 TATATATAAAT
*
102588 GATATA-AAAT
1 TATATATAAAT
102598 TATATATAAACT
1 TATATATAAA-T
102610 ATATATATAAAT
1 -TATATATAAAT
102622 TATAT
1 TATAT
102627 TTATGTGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.24
11 13 0.39
12 2 0.06
13 10 0.30
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (11 bp):
TATATATAAAT
Found at i:102685 original size:18 final size:18
Alignment explanation
Indices: 102662--102716 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
102652 TGTATATAAA
102662 ATTATAAACTATATTTAT
1 ATTATAAACTATATTTAT
*
102680 ATTATAAACTATA-TAATT
1 ATTATAAACTATATTTA-T
* *
102698 ATTATAAGCTATATATAT
1 ATTATAAACTATATTTAT
102716 A
1 A
102717 AATTATGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.90
19 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTATAAACTATATTTAT
Found at i:102766 original size:28 final size:27
Alignment explanation
Indices: 102571--102877 Score: 106
Period size: 26 Copynumber: 11.2 Consensus size: 27
102561 AAATTGAAAA
*
102571 ATATA-ATATATA-TATATGATATAAA-
1 ATATATATATAAACTATAT-ATATAAAT
102596 ATTATAT--ATAAACTATATATATAAATT
1 A-TATATATATAAACTATATATATAAA-T
* * *
102623 ATATTTATGTGAACTATATATATAAA-
1 ATATATATATAAACTATATATATAAAT
* * * *
102649 ATATGTATATAAAAT-TATAAACTATAT
1 ATATATATATAAACTATATATA-TAAAT
* *
102676 TTATAT-TATAAACTATATAATTATTATAAG
1 ATATATATATAAACTATAT-A-TA-TA-AAT
* * * * *
102706 CTATATATATAAATTATGTTTATGTGAAT
1 ATATATATATAAACTA--TATATATAAAT
*
102735 -TATATATATAAACTATGTATATAAACT
1 ATATATATATAAACTATATATATAAA-T
*
102762 ATATATGTATAAACTATA-A-A-AAGTAT
1 ATATATATATAAACTATATATATAA--AT
* * *
102788 ATAAACTATAAAAATTATATAGTTTATAAAT
1 ATATA-TATATAAACTATATA---TATAAAT
* * *
102819 AT-TAT-T-TATATTA-ATATAGTATAT
1 ATATATATATAAACTATATATA-TAAAT
102843 ATATATATATAAACTATATATGTATAAACT
1 ATATATATATAAACTATATA--TATAAA-T
102873 ATATA
1 ATATA
102878 AAGTATATAG
Statistics
Matches: 207, Mismatches: 40, Indels: 65
0.66 0.13 0.21
Matches are distributed among these distances:
23 2 0.01
24 6 0.03
25 22 0.11
26 51 0.25
27 31 0.15
28 51 0.25
29 9 0.04
30 16 0.08
31 13 0.06
32 2 0.01
33 4 0.02
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.43
Consensus pattern (27 bp):
ATATATATATAAACTATATATATAAAT
Found at i:102792 original size:18 final size:18
Alignment explanation
Indices: 102769--102808 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
102759 ACTATATATG
102769 TATAAACTATAAAAAGTA
1 TATAAACTATAAAAAGTA
*
102787 TATAAACTATAAAAATTA
1 TATAAACTATAAAAAGTA
102805 TATA
1 TATA
102809 GTTTATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33
Consensus pattern (18 bp):
TATAAACTATAAAAAGTA
Found at i:103124 original size:7 final size:7
Alignment explanation
Indices: 103112--103216 Score: 79
Period size: 7 Copynumber: 15.0 Consensus size: 7
103102 CATACATTAG
103112 GGTTTAT
1 GGTTTAT
103119 GGTTTA-
1 GGTTTAT
*
103125 GTATTTAT
1 G-GTTTAT
103133 GGTTTAT
1 GGTTTAT
103140 GGTTTA-
1 GGTTTAT
103146 GGATTTAT
1 GG-TTTAT
*
103154 GATTTAT
1 GGTTTAT
* *
103161 GATTTAG
1 GGTTTAT
*
103168 GGTTTAA
1 GGTTTAT
*
103175 GGTTTAA
1 GGTTTAT
*
103182 GGTTTAA
1 GGTTTAT
*
103189 GATTTAT
1 GGTTTAT
* *
103196 GATTTAA
1 GGTTTAT
*
103203 GGTTTAG
1 GGTTTAT
103210 GGTTTAT
1 GGTTTAT
103217 ATAAACTATA
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
6 3 0.04
7 77 0.94
8 2 0.02
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
GGTTTAT
Found at i:103138 original size:21 final size:21
Alignment explanation
Indices: 103112--103216 Score: 120
Period size: 21 Copynumber: 5.0 Consensus size: 21
103102 CATACATTAG
*
103112 GGTTTATGGTTTAGTATTTAT
1 GGTTTATGGTTTAGGATTTAT
103133 GGTTTATGGTTTAGGATTTAT
1 GGTTTATGGTTTAGGATTTAT
* * * *
103154 GATTTATGATTTAGGGTTTAA
1 GGTTTATGGTTTAGGATTTAT
* *
103175 GGTTTAAGGTTTAAGATTTAT
1 GGTTTATGGTTTAGGATTTAT
* * *
103196 GATTTAAGGTTTAGGGTTTAT
1 GGTTTATGGTTTAGGATTTAT
103217 ATAAACTATA
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 70 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (21 bp):
GGTTTATGGTTTAGGATTTAT
Found at i:103485 original size:19 final size:21
Alignment explanation
Indices: 103445--103490 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
103435 AAATTTTCTA
*
103445 TTCCCTCTAAATTTATCCAAT
1 TTCCCTCTAAATTTACCCAAT
103466 TTCCCTCTAAA-TT-CCCAAT
1 TTCCCTCTAAATTTACCCAAT
103485 TTCCCT
1 TTCCCT
103491 ACATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 11 0.46
20 2 0.08
21 11 0.46
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (21 bp):
TTCCCTCTAAATTTACCCAAT
Found at i:104063 original size:2 final size:2
Alignment explanation
Indices: 104056--104092 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
104046 TATGTTTAAT
104056 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
104093 TATTCAAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:104212 original size:17 final size:18
Alignment explanation
Indices: 104190--104244 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
104180 TTAGGAAATT
*
104190 TTGAGAA-TATAGGGAAA
1 TTGAGAATTAGAGGGAAA
104207 TTGAGAATTTAGAGGGAAA
1 TTGAGAA-TTAGAGGGAAA
*
104226 TTGGGAAATTTAGAGGGAA
1 TTGAG-AA-TTAGAGGGAA
104245 TAAAAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 7 0.21
19 13 0.39
20 13 0.39
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (18 bp):
TTGAGAATTAGAGGGAAA
Found at i:104222 original size:19 final size:20
Alignment explanation
Indices: 104200--104244 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
104190 TTGAGAATAT
104200 AGGGAAATTGAG-AATTTAG
1 AGGGAAATTGAGAAATTTAG
*
104219 AGGGAAATTGGGAAATTTAG
1 AGGGAAATTGAGAAATTTAG
104239 AGGGAA
1 AGGGAA
104245 TAAAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (20 bp):
AGGGAAATTGAGAAATTTAG
Found at i:104626 original size:23 final size:21
Alignment explanation
Indices: 104600--104656 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
104590 TTAATACTAA
104600 TATTTATTTATTATCAAATTAAT
1 TATTTATTTATTATCAAA--AAT
*
104623 TA-TTATTTTATT-TCCAAAAT
1 TATTTA-TTTATTATCAAAAAT
104643 TATTTATATTATTA
1 TATTTAT-TTATTA
104657 ATGTAAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
20 6 0.21
21 8 0.28
22 7 0.24
23 8 0.28
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTTATTTATTATCAAAAAT
Found at i:105021 original size:16 final size:16
Alignment explanation
Indices: 105000--105078 Score: 122
Period size: 16 Copynumber: 4.9 Consensus size: 16
104990 TCATTTACAG
* *
105000 GTCAGGTTAAAAACAA
1 GTCAGGTTGAAAACAT
* *
105016 GTCAGGTTAAAAACAG
1 GTCAGGTTGAAAACAT
105032 GTCAGGTTGAAAACAT
1 GTCAGGTTGAAAACAT
105048 GTCAGGTTGAAAACAT
1 GTCAGGTTGAAAACAT
105064 GTCAGGTTGAAAACA
1 GTCAGGTTGAAAACA
105079 GGTCGGGTAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 60 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.22
Consensus pattern (16 bp):
GTCAGGTTGAAAACAT
Found at i:106258 original size:170 final size:171
Alignment explanation
Indices: 105817--106333 Score: 1027
Period size: 171 Copynumber: 3.0 Consensus size: 171
105807 ACTACTTTAT
105817 AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
1 AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
105882 TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
66 TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
105947 GATAAAACATTAAAACCAAAATATTATTAAAAAAAAGAAAG
131 GATAAAACATTAAAACCAAAATATTATTAAAAAAAAGAAAG
105988 AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
1 AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
106053 TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
66 TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
106118 GATAAAACATTAAAACCAAAATATTATT-AAAAAAAGAAAG
131 GATAAAACATTAAAACCAAAATATTATTAAAAAAAAGAAAG
106158 AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
1 AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
106223 TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
66 TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
106288 GATAAAACATTAAAACCAAAATATTATTAAAAAAAAGAAAG
131 GATAAAACATTAAAACCAAAATATTATTAAAAAAAAGAAAG
106329 AATCA
1 AATCA
106334 GCTTTAAATG
Statistics
Matches: 345, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
170 170 0.49
171 175 0.51
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (171 bp):
AATCACCGTAGATTATTTAAAAATTGAATAAATGTCAAAATAACTATTTTGATAAACATTAGAGT
TAAAATGTTTTAAAAAATAATAAAAGTATGATGATTATTCAATTAAACATTAGAGTTCTTTTTAA
GATAAAACATTAAAACCAAAATATTATTAAAAAAAAGAAAG
Found at i:108351 original size:43 final size:43
Alignment explanation
Indices: 108191--108396 Score: 132
Period size: 43 Copynumber: 4.8 Consensus size: 43
108181 TTTATTGTAT
* * * * * *
108191 AAACGCCGCAATAGGATATGATATTTAGCGGCGTTTGTCCAAA
1 AAACGACGCAATAGGTTTTGATATTTAGCGGCGTTTCTCTAAC
* * * ** * * *
108234 AAATG-CGTAATAGGTGTTGAGGTTTAGCGACGTTTTTC-CAC
1 AAACGACGCAATAGGTTTTGATATTTAGCGGCGTTTCTCTAAC
* * * * * * *
108275 AAA-TACCGCAATAGGTATTAAGATTTCGCGGCGTTTGTTTAAC
1 AAACGA-CGCAATAGGTTTTGATATTTAGCGGCGTTTCTCTAAC
* *
108318 AAACGACGCAATAGGTTTTGATATTTAGAGGCGTTTCTCTCAC
1 AAACGACGCAATAGGTTTTGATATTTAGCGGCGTTTCTCTAAC
* **
108361 AAACGCCATAATA-GTTTTCGATATTTAGCGGCGTTT
1 AAACGACGCAATAGGTTTT-GATATTTAGCGGCGTTT
108397 TTAACACAAA
Statistics
Matches: 124, Mismatches: 34, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
41 4 0.03
42 55 0.44
43 64 0.52
44 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
AAACGACGCAATAGGTTTTGATATTTAGCGGCGTTTCTCTAAC
Found at i:108405 original size:43 final size:43
Alignment explanation
Indices: 108327--108409 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
108317 CAAACGACGC
**
108327 AATAGGTTTTGATATTTAGAGGCGTTTCTCTCACAAACGCCAT
1 AATAGGTTTTGATATTTAGAGGCGTTTCTAACACAAACGCCAT
* *
108370 AATA-GTTTTCGATATTTAGCGGCGTTTTTAACACAAACGC
1 AATAGGTTTT-GATATTTAGAGGCGTTTCTAACACAAACGC
108410 TACAATAAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 5 0.14
43 30 0.86
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (43 bp):
AATAGGTTTTGATATTTAGAGGCGTTTCTAACACAAACGCCAT
Done.