Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003644.1 Hibiscus syriacus cultivar Beakdansim tig00007743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100910

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1733--1771
19
2.1
19
100
0
78
30
38
10
20
1.86
4642--4679
17
2.2
18
95
4
69
28
0
31
39
1.57
14624--14698
30
2.6
28
76
15
80
72
1
17
9
1.18
15753--16563
55
14.7
55
84
6
699
30
17
24
27
1.97
24231--24269
15
2.6
15
87
0
60
38
10
30
20
1.86
28251--28311
23
2.7
22
92
2
95
22
32
26
18
1.97
34775--34814
20
2.0
21
85
14
57
62
5
10
22
1.46
35000--35043
21
2.1
21
95
0
79
15
25
25
34
1.95
35053--35100
22
2.2
22
100
0
96
16
35
10
37
1.83
37235--37314
36
2.1
39
84
9
112
73
1
6
18
1.11
37238--37291
5
10.6
5
84
4
72
75
0
5
18
0.98
38176--38248
35
2.1
35
90
7
114
60
4
10
24
1.48
45188--45413
22
10.5
22
83
5
311
40
0
11
47
1.45
46850--46939
2
45.5
2
97
2
173
51
0
0
48
1.00
48444--48511
2
34.5
2
97
2
129
50
0
0
50
1.00
56900--56984
43
2.0
44
85
2
118
51
3
2
42
1.31
59125--59154
2
15.0
2
100
0
60
50
0
0
50
1.00
59876--59902
2
13.5
2
100
0
54
51
0
0
48
1.00
61076--61145
29
2.4
28
88
6
104
32
20
15
31
1.94
61593--61646
26
2.1
26
82
6
65
37
5
3
53
1.42
61593--61644
25
2.0
26
81
3
61
36
5
3
53
1.43
64026--64060
4
8.8
4
100
0
70
77
0
22
0
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66783--66840
18
3.3
18
92
2
91
31
3
48
17
1.64
67326--67412
23
3.8
23
80
1
95
27
24
20
27
1.99
67395--67448
18
3.2
18
71
15
60
24
29
20
25
1.99
75926--76070
64
2.2
64
84
3
166
29
17
22
29
1.97
78721--78794
23
3.3
21
75
11
69
27
24
25
22
2.00
84381--84492
22
5.6
22
73
16
84
28
26
17
26
1.98
84415--84468
18
3.2
18
71
15
60
24
29
20
25
1.99
84685--84724
20
1.9
22
90
10
66
37
37
10
15
1.80
87058--87116
18
3.1
18
86
11
82
32
13
6
47
1.69
87337--87401
23
2.9
23
90
2
105
32
21
15
30
1.94
87399--87465
37
1.9
35
85
11
93
25
29
16
28
1.97
87922--87991
33
2.1
33
86
0
95
31
17
31
20
1.95
88499--88528
15
2.0
15
93
0
51
63
0
0
36
0.95
88508--88553
20
2.1
22
84
11
60
71
0
2
26
0.97
89565--89594
14
2.1
14
93
0
51
23
16
23
36
1.94
91384--91450
28
2.4
28
100
0
134
26
31
2
38
1.72
99912--99996
30
2.9
30
76
16
88
42
3
17
36
1.67
99974--100005
15
2.0
17
88
11
50
43
0
3
53
1.16

Tables:   1

The End!