genome.fa.s3645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003645.1 Hibiscus syriacus cultivar Beakdansim tig00007749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82463

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9026--9249	46	4.9	46	93	0	349	45	9	22	22	1.82
9236--9500	46	5.8	45	92	3	431	43	11	23	21	1.85
9031--9295	138	1.9	136	81	7	311	45	10	21	22	1.81
9187--9479	138	2.1	134	84	9	376	43	11	23	21	1.85
9015--9622	118	5.2	118	73	19	474	44	10	22	22	1.83
9169--9654	163	3.0	164	86	6	609	44	10	22	21	1.83
9492--9654	46	3.6	45	92	0	254	44	9	23	22	1.82
9052--9642	26	25.7	20	68	23	189	44	10	23	21	1.83
9026--9654	92	6.8	93	76	16	410	44	10	22	22	1.83
14705--14746	21	2.0	21	85	0	57	33	23	16	26	1.96
19213--19266	21	2.6	21	85	2	74	14	18	1	64	1.37
26462--26538	31	2.5	31	79	6	86	40	10	0	49	1.37
26855--26880	7	3.7	7	100	0	52	11	15	0	73	1.11
33305--33362	29	2.0	29	82	3	71	29	5	20	44	1.73
37181--37218	17	2.2	18	90	4	60	71	2	0	26	1.00
38035--38696	182	3.6	182	89	0	1020	41	14	17	26	1.88
41361--41426	24	2.8	24	76	2	80	28	24	24	22	1.99
41804--41884	43	1.9	41	82	5	99	30	17	3	48	1.64
42671--42720	13	3.8	13	94	5	84	16	30	0	54	1.42
46822--46949	31	4.1	31	77	9	134	26	17	21	35	1.95
46908--47004	30	3.2	30	85	1	104	22	20	23	32	1.98
50172--50237	24	2.8	24	81	2	89	27	24	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50615--50695	43	1.9	41	82	5	99	30	17	3	48	1.64
52331--52365	18	1.9	18	94	0	61	62	0	25	11	1.28
54387--55347	201	4.8	200	86	3	1199	38	14	14	32	1.87
54387--55347	399	2.4	398	86	2	1295	38	14	14	32	1.87
55310--55353	22	2.0	22	86	4	63	27	11	11	50	1.72
56004--56055	2	26.0	2	100	0	104	50	0	0	50	1.00
56866--56915	3	16.7	3	82	0	64	40	2	32	26	1.67
59705--59768	28	2.3	26	77	15	65	48	3	21	26	1.65
59928--60020	32	2.9	32	73	7	91	34	15	17	33	1.91
64926--64978	20	2.7	20	74	11	63	28	33	15	22	1.94
64987--65126	20	7.0	20	70	16	78	41	22	16	19	1.90
64966--65097	40	3.3	39	80	10	151	40	21	16	21	1.91
64966--65126	80	2.0	80	90	0	250	40	22	16	20	1.91
64987--65113	40	3.2	39	76	8	130	40	23	15	19	1.90
65579--65624	14	3.3	14	81	0	56	47	30	15	6	1.70
67643--67684	12	3.5	12	83	0	57	28	2	2	66	1.16
67846--67926	21	3.9	21	71	9	58	23	33	19	23	1.97
69254--69393	66	2.2	64	86	7	189	31	0	17	50	1.51
69808--69844	18	2.1	18	89	0	56	51	10	5	32	1.60
70272--70313	20	2.1	20	95	0	75	47	21	14	16	1.82
70666--70701	18	2.0	18	94	0	63	16	2	25	55	1.55
73940--74026	20	4.3	20	78	10	81	20	14	27	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73940--74026	40	2.2	41	85	8	117	20	14	27	36	1.92
74046--74088	21	2.0	21	90	0	68	41	16	20	20	1.90
76581--77944	199	6.8	200	87	1	1747	39	14	15	31	1.87
76581--77944	597	2.3	600	88	2	1985	39	14	15	31	1.87
79498--79545	19	2.5	19	93	0	78	31	4	10	54	1.53

Tables:   1

The End!