Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003647.1 Hibiscus syriacus cultivar Beakdansim tig00007753_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66821

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1359--1502
64
2.3
63
83
7
157
30
18
21
29
1.97
15941--15984
6
7.2
6
82
12
54
79
2
15
2
0.93
22669--22761
24
4.0
24
77
12
95
76
4
16
3
1.08
22690--22749
17
3.7
16
77
18
54
78
3
15
3
1.01
22671--22773
24
4.3
22
80
16
75
76
4
14
3
1.09
23764--24097
139
2.4
139
85
1
445
31
28
16
23
1.96
24202--24396
107
1.8
107
85
2
275
35
24
14
26
1.93
26148--26173
9
2.9
9
100
0
52
11
11
7
69
1.37
26263--26399
32
4.2
32
75
11
125
31
16
2
48
1.61
26822--26851
2
15.0
2
100
0
60
50
0
0
50
1.00
27072--27105
5
6.8
5
87
12
52
17
0
0
82
0.67
28072--28126
21
2.6
21
100
0
110
36
16
21
25
1.94
29334--29392
18
3.4
17
81
11
66
35
0
1
62
1.05
30006--30035
2
15.0
2
100
0
60
50
0
0
50
1.00
32880--32950
13
5.5
13
69
24
60
28
2
32
36
1.72
32875--32951
26
3.0
26
100
0
154
31
3
29
35
1.76
40766--40831
12
5.6
12
83
3
80
12
15
46
25
1.80
40766--40831
23
2.8
24
81
4
80
12
15
46
25
1.80
40829--40891
24
2.6
25
78
16
71
44
0
0
55
0.99
40927--40969
8
5.6
8
86
8
63
18
13
44
23
1.86
40927--40969
15
2.8
15
89
3
68
18
13
44
23
1.86
45223--45269
23
2.0
24
95
4
87
44
12
17
25
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46323--46385
30
2.1
30
88
2
92
41
6
0
52
1.27
46349--46417
27
2.5
27
83
2
75
42
4
1
52
1.30
46397--46430
16
2.1
17
88
5
52
52
0
5
41
1.25
46445--46477
17
2.0
17
94
5
59
63
0
6
30
1.18
46419--46492
36
1.9
41
84
13
104
60
0
2
36
1.11
46459--46519
28
2.1
29
82
11
72
55
1
1
40
1.19
46569--46621
15
3.5
15
80
10
54
49
0
18
32
1.48
47218--47266
21
2.3
21
92
0
89
40
30
14
14
1.85
53132--53200
35
2.0
35
88
0
102
44
21
1
31
1.61
53211--53278
34
2.0
35
85
2
93
36
0
19
44
1.51
54111--54217
58
1.9
57
81
12
134
45
0
0
52
1.13
54657--54725
36
1.9
37
82
5
88
50
5
1
42
1.35
56317--56476
65
2.5
64
90
1
257
28
16
23
32
1.96
56317--56524
65
3.2
64
83
6
233
27
16
23
32
1.96
62332--62456
21
5.8
21
74
17
96
24
19
26
30
1.98
65171--65212
19
2.2
19
100
0
84
28
40
11
19
1.87

Tables:   1

The End!