Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003648.1 Hibiscus syriacus cultivar Beakdansim tig00007754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52087

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3333--3363
14
2.2
14
94
0
53
6
38
0
54
1.26
4223--4259
10
3.9
10
79
13
51
56
0
0
43
0.99
4495--4669
97
1.8
96
86
4
257
28
17
17
37
1.92
4495--4767
93
2.9
91
80
9
279
27
16
19
36
1.93
4541--4794
93
2.7
92
77
10
253
27
18
17
36
1.93
4850--4928
20
4.0
20
89
0
113
36
22
17
22
1.95
4850--4941
20
4.6
20
85
5
96
34
22
19
22
1.96
8091--8207
21
5.4
21
77
11
103
35
25
15
23
1.94
8077--8188
23
5.0
23
73
9
90
32
24
16
26
1.96
8077--8206
67
2.0
65
89
3
197
33
24
16
25
1.96
19513--20764
618
2.0
620
95
0
2276
37
12
17
32
1.87
20844--20883
13
3.0
13
82
7
53
37
0
0
62
0.95
29904--31133
609
2.0
609
91
4
1973
37
12
17
32
1.88
30814--31428
307
2.0
304
89
2
948
34
12
21
31
1.91
32117--32153
13
3.0
13
84
7
51
37
0
0
62
0.96
33716--35622
957
2.0
953
90
3
2985
37
12
16
34
1.85
42938--42975
13
3.0
13
80
7
51
36
2
0
60
1.11
46325--46364
14
2.9
15
78
14
50
37
2
0
60
1.11

Tables:   1

The End!