Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003649.1 Hibiscus syriacus cultivar Beakdansim tig00007755_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77573

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
725--825
37
2.7
37
79
1
112
32
19
15
31
1.94
2103--2178
29
2.6
29
95
0
143
44
18
10
26
1.82
3283--3308
4
6.5
4
100
0
52
23
0
0
76
0.78
4159--4205
20
2.3
20
92
0
76
34
23
19
23
1.97
4199--4261
20
3.2
20
93
0
108
41
25
15
17
1.89
4419--4464
22
2.1
22
95
0
83
26
43
10
19
1.84
4835--4888
20
2.8
20
85
2
74
12
16
22
48
1.80
6537--6586
21
2.4
21
82
0
64
20
16
32
32
1.94
7113--7183
20
3.5
20
88
0
97
33
19
14
32
1.92
7113--7245
20
6.6
20
79
6
92
31
21
13
33
1.92
7424--7456
16
2.1
16
88
5
50
30
6
0
63
1.18
8199--8252
24
2.2
24
86
0
72
20
14
18
46
1.84
10837--10877
20
2.0
20
90
0
64
17
21
19
41
1.90
10951--11000
25
2.0
25
92
0
82
28
8
20
44
1.79
12754--12810
29
2.0
29
92
0
96
28
12
24
35
1.91
12760--12818
29
2.0
29
86
0
82
32
11
23
32
1.91
12990--13022
13
2.4
14
95
5
59
48
21
0
30
1.50
14373--14445
21
3.5
21
80
0
92
23
23
34
19
1.97
14607--14644
19
2.0
20
89
5
60
47
23
13
15
1.81
14678--14734
29
2.0
29
85
0
78
28
24
15
31
1.96
14892--14927
18
2.0
18
94
0
63
16
2
25
55
1.55
15136--15171
16
2.3
16
90
4
56
63
0
5
30
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17966--17998
15
2.3
15
89
5
50
54
0
3
42
1.15
18062--18111
25
2.0
25
84
11
66
70
0
4
26
1.05
19456--19507
3
17.0
3
78
11
52
59
0
1
38
1.08
19438--19503
25
2.4
27
82
12
73
56
0
1
42
1.08
19635--20733
76
14.5
76
97
0
2054
35
21
19
22
1.96
21189--21231
22
2.0
22
100
0
86
44
13
9
32
1.76
27973--28011
14
2.8
14
85
11
53
58
7
17
15
1.59
31128--31160
15
2.3
15
89
5
50
54
0
3
42
1.15
31224--31273
25
2.0
25
84
11
66
70
0
4
26
1.05
32679--32730
3
17.0
3
78
11
52
59
0
1
38
1.08
32657--32729
37
2.0
36
82
12
87
56
0
1
42
1.08
32657--32726
28
2.6
25
82
13
68
55
0
1
42
1.08
34011--34046
17
2.1
18
89
5
56
50
2
0
47
1.15
47352--47381
15
2.0
15
93
0
51
43
20
23
13
1.86
52962--53009
20
2.4
19
93
6
78
62
0
35
2
1.07
53296--53336
21
2.0
20
85
4
55
39
2
7
51
1.43
56940--57323
54
7.1
54
90
0
529
36
19
14
29
1.91
59863--59967
17
6.1
17
74
12
88
40
9
12
38
1.76
61921--61962
22
2.0
22
85
4
59
64
16
4
14
1.45
63601--63737
17
7.9
17
80
9
152
39
6
13
40
1.70
63732--63771
17
2.4
17
86
0
53
45
7
20
27
1.78
63605--63754
34
4.4
34
76
11
108
40
6
13
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65036--65105
17
4.1
17
83
5
88
38
8
12
40
1.74
65036--65105
34
2.1
34
86
5
97
38
8
12
40
1.74
67840--67889
23
2.1
24
85
3
66
16
6
0
78
0.95
69112--69187
17
4.5
17
77
4
66
39
6
11
42
1.68
69149--69192
17
2.6
17
88
0
61
40
9
9
40
1.68
69248--69289
17
2.5
17
84
0
57
42
11
14
30
1.81
76788--76820
15
2.3
15
89
5
50
60
0
0
39
0.97
77509--77546
19
2.0
20
84
5
51
47
23
0
28
1.52

Tables:   1

The End!