genome.fa.s3650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003650.1 Hibiscus syriacus cultivar Beakdansim tig00007756_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117675

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915--961	20	2.3	20	96	0	85	23	42	21	12	1.87
4546--4587	22	2.0	22	90	9	70	42	14	21	21	1.88
5391--5539	21	7.0	21	70	3	91	24	14	24	36	1.93
5860--5929	2	35.0	2	100	0	140	50	0	0	50	1.00
6293--6326	16	2.1	17	88	5	52	38	0	17	44	1.49
12723--13264	268	2.0	268	99	0	1075	30	17	21	30	1.96
21178--21217	20	2.0	20	85	0	53	27	37	0	35	1.57
21223--21277	12	4.2	12	77	20	56	32	0	0	67	0.91
23573--23633	34	1.9	31	87	12	88	31	9	4	54	1.55
27048--27076	13	2.3	13	94	5	51	68	0	0	31	0.89
33061--33131	31	2.3	31	87	0	97	42	14	22	21	1.88
33565--33612	23	2.1	23	84	7	62	41	6	2	50	1.39
35833--35864	2	16.0	2	100	0	64	50	0	0	50	1.00
36836--36974	69	2.0	69	97	0	260	33	13	20	32	1.91
38573--38600	14	2.0	14	100	0	56	14	14	35	35	1.86
39232--39290	28	2.1	28	100	0	118	22	11	25	40	1.88
39518--39561	20	2.2	20	87	0	61	50	11	9	29	1.69
43748--43777	7	4.4	7	95	4	53	43	0	0	56	0.99
45534--45580	12	3.9	12	77	5	51	19	8	8	63	1.48
56004--56046	16	2.6	16	85	3	59	27	4	4	62	1.35
56162--56198	17	2.1	18	85	14	51	40	0	0	59	0.97
60108--60477	185	2.0	182	92	3	609	42	3	8	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62634--62843	20	10.5	20	97	0	366	41	20	18	19	1.91
62830--62896	20	3.3	20	89	0	98	32	25	17	23	1.97
63733--63791	24	2.5	24	94	0	100	20	20	22	37	1.95
66204--66297	20	4.7	20	86	2	127	38	23	20	18	1.93
66269--66358	33	2.7	33	87	3	117	45	20	21	13	1.84
66379--66474	33	2.8	33	88	3	138	12	22	20	43	1.86
67523--67600	21	3.6	22	71	10	63	20	20	35	23	1.96
67701--67771	20	3.5	20	82	3	81	22	21	21	35	1.96
67768--67813	21	2.2	21	88	0	65	41	15	26	17	1.88
68342--68376	15	2.3	15	90	0	52	31	14	22	31	1.94
71039--71105	22	3.0	22	91	4	98	13	23	44	17	1.85
71046--71106	17	3.3	17	77	20	68	13	22	45	18	1.83
71102--71200	9	10.3	9	77	12	81	29	26	27	17	1.97
71104--71201	19	5.1	19	78	13	92	29	26	25	18	1.98
71103--71200	29	3.4	30	85	5	112	29	26	26	17	1.97
77866--77935	22	3.2	22	88	8	90	12	24	44	18	1.85
77873--77910	17	2.2	17	95	0	67	13	23	44	18	1.85
77903--77940	12	3.0	13	76	7	51	5	23	50	21	1.69
77879--77949	22	3.0	22	86	12	65	9	25	46	18	1.79
77937--78024	9	9.3	9	82	7	95	27	28	28	15	1.96
77943--78025	29	3.0	26	81	8	58	27	28	26	16	1.97
77943--78024	19	4.3	19	83	9	105	28	29	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85189--85219	7	4.4	7	100	0	62	25	29	29	16	1.96
85223--85264	12	3.6	12	77	6	50	9	26	45	19	1.80
85223--85267	23	2.0	23	95	0	81	8	24	48	17	1.75
85209--85270	17	3.3	17	74	23	61	12	24	45	17	1.84
85274--85364	10	9.4	9	74	11	65	28	27	26	17	1.98
85291--85365	29	2.5	31	85	12	104	29	26	25	18	1.98
85277--85365	9	9.1	10	77	12	78	29	26	24	19	1.98
86343--86404	31	2.0	31	90	0	97	32	14	19	33	1.92
93111--93172	19	3.2	19	84	6	81	37	4	6	51	1.49
93567--93654	44	2.0	44	100	0	176	22	18	11	47	1.80
93999--94146	76	1.9	76	91	0	242	35	18	8	36	1.82
96835--96879	23	2.0	23	90	0	72	13	6	17	62	1.52
97493--97530	20	1.9	20	94	0	67	52	5	7	34	1.53
98169--98219	23	2.2	24	89	10	88	66	3	0	29	1.09
98172--98224	22	2.4	23	93	6	92	67	3	0	28	1.07
99013--99055	21	2.0	21	86	0	59	32	18	18	30	1.95
103838--103891	2	27.5	2	92	3	92	48	0	0	51	1.00
103887--103943	28	2.1	27	83	9	71	43	0	1	54	1.10
103888--103943	27	2.0	27	86	10	76	42	0	1	55	1.10
104343--104460	57	2.1	57	84	9	154	52	3	0	43	1.23
108782--108833	3	17.3	3	100	0	104	65	0	0	34	0.93
109158--109264	42	2.6	41	78	8	126	31	21	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109399--109501	42	2.5	42	82	1	118	31	22	21	25	1.98
109672--109774	42	2.5	41	80	4	127	33	21	21	24	1.97
109920--110026	42	2.6	41	74	12	101	31	20	19	28	1.97
109018--110877	248	7.5	248	87	3	2522	33	18	16	32	1.93
110416--110502	42	2.1	42	86	2	122	33	21	18	26	1.96

Tables:   1

The End!