genome.fa.s3651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003651.1 Hibiscus syriacus cultivar Beakdansim tig00007758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79003

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439--569	51	2.6	51	82	2	147	49	0	16	33	1.51
3685--4007	55	5.9	55	91	3	501	32	12	19	34	1.89
3685--4007	109	3.0	109	90	4	508	32	12	19	34	1.89
3685--4007	164	2.0	164	90	2	515	32	12	19	34	1.89
10098--10156	19	2.9	20	85	11	84	37	15	18	28	1.91
10529--10929	55	7.3	55	90	2	592	33	12	18	35	1.89
10529--10908	164	2.3	165	90	2	586	33	12	18	34	1.89
18992--19164	54	3.2	54	89	0	265	35	21	17	24	1.95
18992--19218	54	4.2	53	82	5	233	36	20	17	25	1.94
18998--19223	108	2.1	108	84	4	287	34	20	17	26	1.95
23450--23494	14	3.1	14	81	6	54	26	33	22	17	1.96
25798--25880	39	2.1	39	86	0	112	18	31	24	26	1.97
25853--25969	45	2.6	45	86	5	157	24	29	16	29	1.96
25843--26097	44	5.9	42	79	4	197	22	28	18	30	1.97
25905--26097	86	2.2	85	83	3	233	23	26	18	31	1.97
25842--26119	129	2.1	135	79	8	313	21	28	19	31	1.97
28083--28397	165	1.9	164	87	3	463	27	19	19	34	1.95
28081--28398	55	5.8	55	83	1	388	27	18	19	34	1.95
28763--28815	22	2.5	22	85	11	67	32	24	13	30	1.93
28871--28908	20	1.9	20	88	0	58	18	31	10	39	1.85
34012--34224	55	3.9	55	84	3	279	26	20	19	33	1.96
34012--34213	109	1.9	109	88	2	307	26	20	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34552--34622	19	3.5	22	74	14	71	30	22	15	30	1.95
34647--34697	20	2.6	20	84	3	68	15	33	17	33	1.92
37583--37815	54	4.4	54	82	5	269	36	18	18	26	1.94
41263--41570	153	2.0	152	97	0	580	42	11	4	41	1.62
44757--44823	33	2.0	33	94	0	116	37	17	20	23	1.94
44857--44901	22	2.1	22	83	4	56	13	8	15	62	1.54
50829--50878	26	2.0	25	84	4	64	34	38	0	28	1.57
50847--50887	22	1.9	21	90	5	64	34	34	2	29	1.71
51204--51266	10	6.2	9	77	22	63	82	3	12	1	0.86
51204--51266	21	3.1	19	82	14	81	82	3	12	1	0.86
51222--51260	12	3.3	12	82	3	53	84	2	10	2	0.81
51208--51284	31	2.3	34	84	13	106	76	3	15	3	1.08
55269--55309	22	1.9	21	90	5	64	34	34	2	29	1.71
56836--56974	29	4.8	30	66	14	94	38	4	20	35	1.73
56803--56974	57	3.0	57	89	5	256	38	4	22	34	1.73
56765--56974	58	3.6	57	86	7	257	38	4	23	33	1.75
59099--59144	4	10.8	4	86	13	65	76	0	2	21	0.90
59093--59144	18	2.9	18	85	2	79	76	0	1	21	0.87
59093--59146	22	2.4	23	90	3	92	77	0	1	20	0.86
59193--59706	37	13.8	37	86	7	681	43	8	3	44	1.51
59613--59711	42	2.3	44	92	5	175	44	5	2	48	1.36
70664--70703	20	2.0	21	85	14	57	17	10	32	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76728--76774	17	2.7	17	87	9	60	4	12	4	78	1.04

Tables:   1

The End!