genome.fa.s3653.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003653.1 Hibiscus syriacus cultivar Beakdansim tig00007767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84664

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97--146	19	2.6	19	90	9	75	30	12	16	42	1.84
2811--2975	89	1.9	85	84	9	217	32	23	7	36	1.82
2811--2975	45	3.8	44	88	7	223	32	23	7	36	1.82
3050--3130	40	2.0	40	82	0	99	25	24	23	25	2.00
14041--14087	17	2.8	17	86	0	67	44	2	10	42	1.51
16527--16567	20	2.0	20	85	9	55	34	19	4	41	1.73
17036--17074	20	2.0	20	89	0	60	33	23	10	33	1.88
19708--19745	20	1.9	20	88	0	58	13	15	13	57	1.65
20377--20422	2	23.0	2	86	0	65	45	2	4	47	1.34
31866--31894	15	2.0	15	93	6	51	75	3	20	0	0.94
33051--33111	24	2.5	23	76	7	59	32	16	16	34	1.91
46201--46238	20	1.9	20	84	10	51	28	10	5	55	1.56
48208--48372	80	2.0	82	81	9	196	26	20	18	35	1.95
48208--48362	27	5.8	27	76	8	129	26	20	18	35	1.95
50825--51016	57	3.4	57	80	4	208	37	8	15	38	1.78
51224--51321	50	2.0	50	93	0	169	34	11	27	26	1.90
51274--51576	130	2.3	131	89	2	464	33	14	25	26	1.95
51273--51576	67	4.6	67	87	3	454	33	15	25	26	1.95
51528--51629	53	1.9	53	87	0	150	38	13	20	27	1.90
51586--51713	68	1.9	67	86	1	184	34	10	25	29	1.90
51653--51801	81	1.8	81	94	0	262	36	9	22	32	1.86
51658--51821	81	2.0	81	88	2	240	37	9	20	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51836--52144	45	6.9	44	83	4	348	35	10	23	30	1.89
51836--52144	135	2.3	134	84	3	395	35	10	23	30	1.89
53904--53938	2	17.5	2	100	0	70	51	0	0	48	1.00
54794--54998	45	4.6	45	85	2	250	31	18	8	41	1.80
54794--55037	90	2.7	90	83	2	240	30	20	9	40	1.83
61072--61240	57	2.9	58	81	7	202	34	10	15	39	1.82
61072--61287	115	1.9	115	79	5	249	36	9	14	38	1.80
61445--61912	199	2.3	199	89	1	715	31	14	25	28	1.95
61447--61912	132	3.5	132	87	3	659	31	14	25	28	1.95
61447--61925	133	3.6	127	76	12	432	32	13	25	28	1.94
61846--62000	81	1.9	81	87	0	229	34	13	21	30	1.92
62036--62360	45	7.2	45	91	0	420	35	11	24	28	1.90
80521--80862	55	6.2	55	84	1	427	37	16	11	33	1.86
80526--80841	165	1.9	163	88	3	474	37	16	11	34	1.85
81243--81296	22	2.7	19	82	8	63	29	14	16	38	1.89
81243--81296	19	2.6	21	78	18	60	29	14	16	38	1.89

Tables:   1

The End!