genome.fa.s3654.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003654.1 Hibiscus syriacus cultivar Beakdansim tig00007770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74427

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2992--3032	18	2.2	20	86	8	59	36	17	12	34	1.87
3529--3557	11	2.5	12	94	5	51	41	17	17	24	1.90
7987--8105	42	2.8	42	85	2	168	50	18	4	26	1.65
10848--10925	4	19.5	4	77	17	74	70	2	3	23	1.16
10832--10912	18	4.6	18	75	18	80	67	1	6	24	1.20
10855--10949	48	2.0	48	93	0	163	66	3	6	24	1.30
18083--18125	20	2.2	20	91	0	68	34	20	11	32	1.89
18633--18660	11	2.5	11	100	0	56	42	17	17	21	1.89
23112--23231	42	2.8	42	86	3	170	50	18	4	26	1.64
25655--25697	22	2.0	21	86	4	59	48	0	2	48	1.14
25618--25697	36	2.2	36	78	8	90	42	3	1	52	1.27
25991--26068	4	19.5	4	77	17	74	70	2	3	23	1.16
25975--26055	18	4.6	18	75	18	80	67	1	6	24	1.20
25998--26092	48	2.0	48	93	0	163	66	3	6	24	1.30
27939--27981	21	2.1	20	86	4	59	37	27	11	23	1.89
35225--35267	20	2.2	20	91	0	68	34	20	11	32	1.89
35774--35801	11	2.5	11	100	0	56	42	17	17	21	1.89
40246--40365	42	2.8	42	86	3	170	50	18	4	26	1.64
43122--43199	4	19.5	4	77	17	74	70	2	3	23	1.16
43106--43186	18	4.6	18	75	18	80	67	1	6	24	1.20
43129--43223	48	2.0	48	93	0	163	66	3	6	24	1.30
50302--50403	34	2.8	37	86	10	158	43	12	14	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50302--50437	37	3.8	35	81	9	150	41	11	13	32	1.81
50895--50941	2	23.5	2	100	0	94	48	0	0	51	1.00
51303--51382	40	2.0	40	86	9	112	31	5	8	55	1.52
51371--51405	2	17.5	2	100	0	70	48	0	0	51	1.00
55848--55912	13	5.2	13	73	15	57	81	6	10	1	0.93
55848--55915	25	2.7	25	82	13	86	80	5	11	1	0.94
55848--55918	16	4.2	16	74	15	72	81	5	11	1	0.91
56517--56560	22	2.0	22	91	8	72	40	20	11	27	1.86
56518--56566	22	2.2	22	85	10	64	46	20	10	22	1.80
56996--57031	18	2.0	18	94	0	63	16	8	33	41	1.78
57595--57752	36	4.3	36	95	2	280	25	20	13	41	1.88
57512--57893	173	2.2	172	85	3	509	27	19	13	39	1.90
57632--57954	137	2.4	137	85	2	459	27	20	13	39	1.89
57676--57857	101	1.8	101	87	2	276	28	18	14	39	1.89
57771--57893	36	3.4	36	83	4	160	26	21	14	38	1.92
57851--58025	67	2.6	65	85	4	233	33	21	9	36	1.85
58629--59289	105	6.3	105	89	3	911	33	25	17	22	1.96
59837--59938	34	2.9	36	91	5	172	44	13	14	27	1.83
60342--60433	3	31.3	3	73	16	52	29	5	1	64	1.23
60330--60373	18	2.6	17	85	7	63	25	4	2	68	1.20
60431--60459	2	14.5	2	100	0	58	48	0	0	51	1.00
60567--60591	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60820--60899	40	2.0	40	86	9	112	31	5	8	55	1.52
72175--72250	31	2.4	32	80	6	84	35	15	13	35	1.87
73441--73485	20	2.2	20	92	0	72	28	31	6	33	1.83
74226--74297	36	2.0	36	100	0	144	27	13	22	36	1.92

Tables:   1

The End!