genome.fa.s3655.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003655.1 Hibiscus syriacus cultivar Beakdansim tig00007773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78763

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5537--5836	53	5.8	53	82	6	312	23	25	19	31	1.98
5543--5839	106	2.9	99	83	5	355	23	25	19	31	1.98
6271--6510	42	5.8	42	70	6	168	32	22	17	27	1.96
14911--14964	28	1.9	28	81	7	65	51	7	0	40	1.30
16422--16498	22	3.5	22	89	0	118	14	22	36	27	1.92
16423--16520	44	2.2	44	83	3	117	14	22	37	25	1.92
18860--18912	20	2.7	20	82	8	63	37	15	28	18	1.91
18962--19006	20	2.1	22	88	8	67	28	15	22	33	1.95
24671--24713	19	2.3	19	91	0	68	30	13	16	39	1.87
25184--25225	17	2.6	16	88	7	66	76	0	11	11	1.03
25180--25229	8	5.8	9	77	15	52	76	0	14	10	1.03
27195--27476	83	3.4	82	84	4	343	36	20	16	26	1.94
27228--27445	42	5.2	42	68	16	148	35	22	16	26	1.94
27266--27420	41	3.8	40	70	13	111	34	21	18	25	1.96
34370--34415	24	1.9	24	90	0	74	2	41	8	47	1.46
39499--39544	24	1.9	24	90	0	74	2	41	8	47	1.46
41647--41811	60	2.8	60	77	3	170	33	23	5	37	1.78
46473--46530	30	1.9	30	85	3	80	37	12	17	32	1.86
51413--51545	45	2.9	45	88	1	194	33	20	6	39	1.79
51659--51780	59	2.1	59	85	3	165	29	24	18	27	1.98
53490--53586	45	2.2	44	96	1	176	35	9	4	51	1.53
55429--55487	5	11.6	5	74	16	50	1	18	1	77	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55420--55483	6	10.8	6	83	11	64	1	17	1	79	0.89
58613--58670	2	30.5	2	84	10	77	46	0	1	51	1.11
58633--58681	25	2.0	24	84	4	62	40	0	8	51	1.32
59385--59474	23	3.9	23	89	0	126	23	31	14	31	1.94
60232--60278	19	2.5	19	96	0	85	34	14	29	21	1.93
62302--62340	12	3.2	12	96	3	69	51	7	41	0	1.31
63412--63451	21	1.9	21	94	0	71	30	25	22	22	1.99
63835--63967	45	2.9	45	88	1	203	33	21	6	39	1.78
64083--64204	59	2.1	59	84	0	154	30	22	18	28	1.97
64492--64539	23	2.0	24	96	4	89	45	8	12	33	1.72
66036--66094	30	2.0	30	86	6	84	33	18	8	38	1.81
66852--66983	44	2.9	45	89	3	203	34	21	4	40	1.74
69040--69085	23	2.0	23	91	4	76	41	13	13	32	1.82
70627--70702	30	2.6	29	79	10	82	34	15	9	40	1.79
76976--77009	17	1.9	18	94	5	61	61	0	0	38	0.96
76955--77056	42	2.5	42	83	13	115	50	1	0	47	1.19
77040--77095	13	4.5	13	77	11	55	48	0	0	51	1.00
77899--77943	21	2.1	22	87	4	65	35	33	17	13	1.89
77891--77996	22	4.8	22	76	5	90	33	27	23	15	1.94
77911--77996	45	2.0	45	83	4	113	33	27	23	15	1.94

Tables:   1

The End!