genome.fa.s366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000366.1 Hibiscus syriacus cultivar Beakdansim tig00000666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70273

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6569--6618	20	2.5	20	86	3	64	42	22	18	18	1.90
7774--7802	12	2.4	12	100	0	58	48	24	0	27	1.51
12763--12811	15	2.9	18	73	17	50	30	28	18	22	1.97
12777--12808	15	2.1	15	94	0	55	34	28	18	18	1.95
12920--12988	24	2.8	26	83	12	85	31	24	5	37	1.79
12953--12988	12	3.0	12	91	0	63	36	25	5	33	1.79
16828--16872	2	22.5	2	100	0	90	51	0	48	0	1.00
18863--18959	20	4.8	20	72	14	83	14	22	21	41	1.89
18870--18997	61	2.1	61	97	0	238	15	21	21	40	1.91
18951--19087	22	6.4	22	77	9	158	20	16	24	38	1.93
18911--18997	19	4.4	19	71	16	68	17	21	19	41	1.90
18951--19087	43	3.2	43	86	3	188	20	16	24	38	1.93
19200--19232	6	5.5	6	100	0	66	33	51	15	0	1.43
20220--20323	19	5.3	19	80	6	127	43	19	18	19	1.89
20220--20362	41	3.6	39	79	8	137	42	20	18	18	1.89
20333--20421	41	2.2	41	91	0	142	37	24	17	20	1.94
20336--20408	20	3.6	20	70	3	65	39	23	20	16	1.92
21309--21376	24	2.9	24	89	6	95	16	20	17	45	1.85
36438--36468	2	15.5	2	100	0	62	51	0	0	48	1.00
39883--39931	23	2.1	23	100	0	98	34	8	22	34	1.84
39846--40008	87	1.9	87	94	0	290	40	11	14	33	1.82
40329--40486	73	2.2	72	84	10	198	28	21	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44985--45028	3	14.7	3	80	0	52	25	31	4	38	1.76
45451--45520	34	2.1	32	89	5	104	21	31	15	31	1.95
45800--45841	21	2.0	21	95	0	75	26	28	21	23	1.99
45947--46013	19	3.5	19	87	0	80	34	13	11	40	1.81
46079--46169	31	3.0	31	96	3	168	42	17	6	32	1.75
46328--46375	22	2.2	22	96	0	87	33	2	8	56	1.41
46886--46925	19	2.1	19	90	0	62	42	12	7	37	1.71
46991--47081	31	3.0	31	96	3	168	42	17	6	32	1.75
48387--48925	201	2.7	201	95	0	963	31	15	15	37	1.89
51084--51144	21	2.9	21	95	0	104	19	27	11	40	1.86
53385--53440	20	2.8	20	91	2	94	19	14	14	51	1.75
57996--58036	19	2.2	19	87	12	59	60	0	0	39	0.96
60751--60790	16	2.5	16	91	0	62	35	30	20	15	1.93
62782--62872	24	3.8	24	71	5	78	46	7	13	32	1.71
62925--62973	26	1.9	26	83	4	64	59	16	4	20	1.53

Tables:   1

The End!