genome.fa.s3661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003661.1 Hibiscus syriacus cultivar Beakdansim tig00007796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117694

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4420--4456	18	2.1	18	89	0	56	21	18	29	29	1.97
4469--4528	23	2.6	23	86	0	93	18	25	26	30	1.98
11580--11639	24	2.5	24	88	0	84	23	21	20	35	1.96
11587--11646	24	2.5	24	86	0	66	25	18	20	36	1.94
16147--16210	24	2.6	25	90	4	96	20	20	23	35	1.96
16293--16390	35	2.8	35	92	0	169	12	32	22	32	1.91
17843--17879	18	2.1	18	89	0	56	24	18	29	27	1.98
21114--21159	20	2.2	20	88	3	65	80	13	6	0	0.89
25795--25829	10	3.5	10	84	0	52	85	8	5	0	0.73
25795--25836	18	2.2	18	87	8	57	80	11	7	0	0.88
30490--30533	19	2.2	19	88	8	61	81	11	6	0	0.86
35183--35226	19	2.3	19	88	4	61	79	13	6	0	0.92
40701--40742	21	2.0	21	86	9	59	28	0	2	69	1.01
40698--40743	15	3.1	16	81	9	53	30	0	2	67	1.03
40740--40821	37	2.2	38	80	4	96	41	4	1	52	1.31
44247--44337	29	3.1	29	85	1	119	28	5	25	40	1.78
44285--44349	29	2.2	29	86	0	85	29	6	23	41	1.78
45374--45553	96	1.9	95	86	6	258	37	14	24	23	1.92
45762--46130	45	8.1	45	88	2	535	39	11	23	25	1.88
52468--52580	21	5.5	21	75	8	115	32	16	19	30	1.94
52488--52601	20	5.6	19	74	12	93	30	18	21	29	1.97
52468--52601	41	3.3	41	94	0	232	32	17	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52593--52771	95	1.9	96	86	5	256	34	17	22	25	1.95
52593--52792	95	2.1	96	83	6	246	34	17	22	26	1.95
53216--53570	79	4.5	79	88	2	507	38	11	22	27	1.89
55039--55106	32	2.1	32	88	0	100	41	0	30	27	1.56
55745--55787	15	2.8	15	85	3	59	53	0	4	41	1.21
55756--55803	22	2.1	23	85	11	64	54	0	6	39	1.26
56499--56529	6	5.3	6	92	7	55	83	0	0	16	0.64
56500--56525	11	2.4	11	100	0	52	84	0	0	15	0.62
57424--57483	23	2.5	25	75	8	70	43	3	0	53	1.17
57433--57489	23	2.5	22	77	8	60	42	3	1	52	1.28
57459--57719	128	2.0	130	96	3	483	33	9	13	42	1.78
57626--57820	98	2.0	96	96	4	356	35	11	16	36	1.84
61261--61332	3	25.0	3	73	18	64	59	1	1	37	1.15
61262--61353	14	6.6	14	75	16	75	58	1	1	39	1.12
61271--61351	35	2.3	36	85	8	105	59	1	1	38	1.13
61455--61573	14	8.7	14	73	17	92	52	9	0	37	1.40
61523--61567	21	2.1	21	91	0	72	51	11	0	37	1.38
62556--62658	51	2.0	51	86	3	145	32	13	24	30	1.93
66376--66466	23	4.0	23	83	5	116	30	23	23	23	1.99
77907--78025	23	5.3	22	79	9	118	32	24	19	23	1.97
77932--78024	46	2.0	46	91	0	150	31	23	21	23	1.99
80431--80461	16	1.9	16	93	0	53	22	12	19	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83276--83324	19	2.8	17	76	11	62	18	10	28	42	1.83
87365--87407	20	2.2	20	83	8	52	55	2	16	25	1.53
87672--87953	122	2.3	122	80	3	289	28	19	17	33	1.95
87470--87954	41	11.9	39	76	6	349	29	18	17	34	1.94
87470--87953	81	5.9	80	77	6	332	29	18	17	34	1.94
87722--87953	122	1.9	123	82	4	290	28	20	17	33	1.95
88307--88341	15	2.2	16	90	5	54	8	48	0	42	1.33
91877--91960	43	2.0	43	95	0	150	22	17	22	36	1.94
93460--93510	20	2.5	20	100	0	102	27	19	19	33	1.96
103648--103854	94	2.2	97	87	6	305	37	15	22	24	1.93
104173--104401	54	4.2	54	86	0	323	32	16	20	30	1.95
104331--104512	93	2.0	93	90	2	285	33	20	18	28	1.96
104424--104770	55	6.3	55	83	2	423	33	18	19	28	1.96
104282--104549	147	1.8	147	87	0	392	32	17	19	29	1.95
104238--104621	202	1.9	201	86	3	549	33	17	19	29	1.95
104420--104771	109	3.2	109	85	2	447	33	19	19	28	1.96
104909--105238	81	4.1	81	83	3	405	39	9	21	29	1.85
107539--107573	18	1.9	18	94	0	61	31	22	17	28	1.96
111365--111452	40	2.2	40	85	0	113	28	3	11	56	1.50
111404--111703	75	3.9	74	77	10	275	26	5	16	52	1.66
111325--111534	115	1.8	115	88	2	323	26	5	16	52	1.64
111554--111688	40	3.4	40	94	1	236	25	5	14	54	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117226--117304	3	26.3	3	100	0	158	0	34	0	65	0.93
117369--117417	3	16.3	3	86	0	71	2	28	2	67	1.13
117494--117534	3	13.7	3	100	0	82	0	34	0	65	0.93
117377--117625	117	2.1	117	97	0	471	24	18	4	51	1.64
117626--117691	3	22.0	3	100	0	132	0	66	0	33	0.92

Tables:   1

The End!