genome.fa.s3662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003662.1 Hibiscus syriacus cultivar Beakdansim tig00007797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118763

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939--2015	39	2.0	39	92	5	131	33	16	15	33	1.91
5959--6005	24	1.9	25	82	4	60	76	2	2	19	0.99
5957--6004	18	2.6	18	83	9	53	77	2	2	18	0.97
7276--7582	38	8.3	39	79	11	251	46	7	3	42	1.48
7290--7553	38	7.1	37	79	10	267	46	6	3	42	1.48
8123--9741	84	19.4	84	84	1	1905	23	17	24	33	1.96
10863--11135	100	2.7	98	87	6	363	32	18	15	33	1.92
15110--15335	38	6.3	37	75	14	120	45	5	4	44	1.47
15093--15335	36	6.9	34	76	15	176	46	5	4	43	1.48
15222--15271	24	2.0	25	88	11	75	48	6	4	42	1.46
19287--19327	17	2.5	16	88	4	55	36	2	2	58	1.24
24728--24781	20	2.8	19	83	5	72	31	7	20	40	1.80
24839--24939	20	5.4	20	72	21	76	32	14	13	38	1.86
24889--24939	19	2.6	20	87	3	68	33	15	13	37	1.87
26855--26881	11	2.5	11	100	0	54	40	0	14	44	1.46
26961--27033	19	3.7	20	82	7	69	35	9	15	39	1.80
27143--27187	19	2.4	19	100	0	90	33	13	11	42	1.79
27143--27212	19	3.6	19	90	5	79	35	14	11	38	1.82
33053--33150	21	4.7	21	80	0	115	35	23	9	31	1.86
36387--36429	18	2.4	18	88	0	59	32	34	0	32	1.58
39320--39367	20	2.5	19	80	16	55	25	18	18	37	1.94
40178--40257	39	2.1	39	100	0	160	50	10	5	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40329--40380	16	3.3	15	86	10	68	51	1	1	44	1.23
50967--51724	391	1.9	391	97	0	1426	21	24	25	29	1.99
52149--52212	30	2.1	30	91	0	101	23	43	6	26	1.77
55799--55824	13	2.0	13	100	0	52	46	38	0	15	1.46
57754--57798	18	2.5	18	81	0	54	28	15	15	40	1.88
59650--59721	24	3.0	24	83	2	92	50	16	12	20	1.78
59664--59745	12	6.9	12	70	18	64	46	18	15	19	1.84
59664--59745	24	3.5	23	84	3	92	46	18	15	19	1.84
65484--65588	44	2.4	46	76	12	105	49	3	1	44	1.31
65624--65702	22	3.5	23	73	10	65	50	0	2	46	1.14
65603--65676	32	2.3	32	81	9	80	51	1	4	43	1.29
65625--65704	23	3.4	23	80	10	83	50	0	2	47	1.14
67163--67629	222	2.1	223	91	2	749	36	27	12	23	1.91
69720--69875	64	2.4	64	82	4	181	30	22	17	30	1.96
72526--72584	29	2.0	30	90	6	93	35	5	15	44	1.68
72690--72768	12	6.2	12	75	15	52	24	34	16	25	1.95
72690--72770	32	2.5	32	88	4	119	23	34	17	24	1.96
72687--72770	20	4.2	20	90	3	116	23	33	17	25	1.97
72884--72923	20	1.9	22	90	10	66	37	40	10	12	1.77
73138--73207	34	2.1	32	86	5	95	32	15	28	22	1.95
75272--75298	8	3.4	8	100	0	54	33	0	11	55	1.35
76035--76094	29	2.0	30	90	6	95	35	6	15	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76174--76229	21	2.7	21	97	0	103	23	35	17	23	1.95
76252--76305	20	2.7	20	82	0	63	24	31	16	27	1.96
76416--76455	20	1.9	21	85	10	55	37	37	10	15	1.80
76670--76739	34	2.1	32	86	5	95	34	15	27	22	1.95
80167--80263	44	2.2	44	83	7	117	25	27	20	25	1.99
80255--80308	21	2.6	21	100	0	108	31	27	24	16	1.96
82498--82548	21	2.4	21	93	0	93	33	0	45	21	1.52
82903--83089	64	2.9	63	80	6	171	29	23	17	29	1.97
82931--83109	64	2.8	62	83	9	218	27	25	17	29	1.98
87138--87218	32	2.5	32	85	0	108	28	16	14	40	1.88
88456--88530	21	3.7	20	77	12	73	26	25	16	32	1.96
90908--90959	27	1.9	27	88	0	77	36	25	17	21	1.94
91424--91448	2	12.5	2	100	0	50	48	0	0	52	1.00
93581--93621	16	2.6	16	100	0	82	9	19	31	39	1.84
95215--95266	21	2.5	22	82	14	58	25	25	15	34	1.95
96496--96552	12	5.2	11	76	19	57	19	28	26	26	1.99
96498--96559	32	1.9	32	87	6	90	19	24	27	29	1.98
98912--98976	24	2.7	24	95	0	112	27	10	18	43	1.83
107807--107852	3	15.3	3	100	0	92	34	0	0	65	0.93
109657--109866	65	3.3	63	79	9	208	31	24	18	25	1.97
118195--118348	62	2.4	65	81	8	183	29	24	19	27	1.98
118320--118368	19	2.6	19	84	9	57	24	28	20	26	1.99

Tables:   1

The End!