genome.fa.s3663.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003663.1 Hibiscus syriacus cultivar Beakdansim tig00007823_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87280

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2662--2725	28	2.4	28	89	5	96	34	7	35	21	1.83
9059--9494	113	3.9	113	83	4	513	28	23	15	33	1.95
9059--9492	226	1.9	226	86	4	617	28	23	15	32	1.95
9379--9766	136	2.9	135	79	8	389	28	23	17	29	1.97
9894--10015	49	2.5	49	84	4	140	26	18	15	40	1.90
9714--9967	113	2.2	113	87	0	364	29	23	16	30	1.96
9822--10128	161	1.9	162	88	3	467	28	21	15	34	1.94
9942--10265	112	2.9	113	87	3	431	27	21	16	33	1.95
13899--13937	19	2.1	19	95	0	69	69	0	28	2	1.02
13893--14006	29	3.9	29	72	13	83	72	1	22	2	1.06
13904--13989	20	4.2	20	78	11	77	72	2	23	2	1.08
13893--14036	14	10.0	14	68	22	52	72	2	21	3	1.09
16086--16390	52	5.7	52	71	13	224	30	9	18	41	1.82
16079--16391	109	2.9	110	81	3	371	31	8	18	41	1.81
16641--17323	40	17.5	39	85	2	777	31	16	16	36	1.91
16641--17304	155	4.2	156	83	3	780	31	16	16	36	1.91
17182--17240	20	3.0	20	69	11	50	33	11	10	44	1.75
17341--17484	59	2.4	59	85	0	189	27	28	15	27	1.97
17421--17671	92	2.8	88	81	8	281	31	23	17	26	1.97
18666--19005	110	3.1	111	82	6	415	25	15	12	46	1.82
22742--22787	22	2.1	22	91	0	74	39	13	8	39	1.75
22748--22791	22	2.0	22	100	0	88	36	9	9	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24434--24484	20	2.5	20	83	0	57	25	17	25	31	1.97
28263--28312	26	1.9	26	91	0	82	30	20	24	26	1.98
28515--28571	27	2.2	25	81	12	62	19	10	7	63	1.49
28796--28824	3	9.7	3	100	0	58	0	0	31	68	0.89
29463--29496	18	2.0	17	88	11	52	20	14	0	64	1.28
31370--31397	3	9.3	3	100	0	56	67	0	0	32	0.91
31486--31578	25	3.8	25	67	16	68	46	2	2	49	1.26
31486--31594	34	3.0	34	67	18	78	46	1	1	49	1.23
34825--34947	59	2.0	60	93	6	212	22	17	21	39	1.93
37079--37110	3	10.7	3	93	0	55	28	0	3	68	1.04
39888--39963	31	2.4	31	80	2	89	26	31	27	14	1.95
39841--39963	63	2.0	63	82	6	151	25	29	28	17	1.97
41450--41484	18	1.9	18	88	0	52	28	17	0	54	1.43
42837--42903	14	4.4	14	81	17	71	20	37	26	14	1.92
42818--42903	33	2.6	33	71	14	95	20	37	26	15	1.92
42791--42894	38	2.7	38	77	14	124	18	35	29	16	1.93
42813--42881	19	3.6	19	100	0	138	18	37	27	15	1.92
44968--45043	31	2.4	31	80	2	89	26	31	27	14	1.95
44921--45043	63	2.0	63	82	6	151	25	29	28	17	1.97
46531--46565	18	1.9	18	88	0	52	28	17	0	54	1.43
47919--47985	14	4.4	14	81	17	71	20	37	26	14	1.92
47900--47985	33	2.6	33	71	14	95	20	37	26	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47873--47976	38	2.7	38	77	14	124	18	35	29	16	1.93
47895--47963	19	3.6	19	100	0	138	18	37	27	15	1.92
50038--50113	31	2.4	31	80	2	89	26	31	27	14	1.95
49991--50113	63	2.0	63	82	6	151	25	29	28	17	1.97
51600--51634	18	1.9	18	88	0	52	28	17	0	54	1.43
52988--53054	14	4.4	14	81	17	71	20	37	26	14	1.92
52969--53054	33	2.6	33	71	14	95	20	37	26	15	1.92
52942--53045	38	2.7	38	77	14	124	18	35	29	16	1.93
52964--53032	19	3.6	19	100	0	138	18	37	27	15	1.92
56567--56872	45	6.8	45	88	1	416	30	18	10	40	1.84
56623--56913	135	2.2	135	84	1	368	31	19	10	38	1.85
56567--56913	90	3.9	88	84	3	397	30	19	10	40	1.85
57418--57463	20	2.2	20	84	7	56	28	23	17	30	1.97
57513--57563	20	2.6	19	87	12	68	23	23	19	33	1.97
60511--60538	14	2.0	14	100	0	56	14	35	21	28	1.92
61318--61419	39	2.6	37	75	13	89	20	27	20	31	1.98
64500--64543	21	2.1	21	100	0	88	0	9	13	77	0.99
75252--75322	21	3.0	25	71	23	71	12	18	0	69	1.20
75252--75342	47	2.0	46	82	6	112	12	20	0	67	1.23

Tables:   1

The End!