genome.fa.s3665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003665.1 Hibiscus syriacus cultivar Beakdansim tig00007830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61510

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4269--4320	21	2.5	21	87	6	70	23	3	36	36	1.73
11573--11608	18	2.0	18	94	0	63	27	41	8	22	1.82
14107--14183	33	2.5	31	85	10	111	41	19	7	31	1.80
14169--14220	19	2.7	19	72	3	50	44	17	5	32	1.72
16762--16812	20	2.6	19	90	6	84	13	35	9	41	1.78
20079--20224	65	2.3	64	80	5	161	30	19	21	28	1.97
20749--20808	31	1.9	31	89	0	93	35	20	16	28	1.94
22765--22869	37	2.8	37	89	0	156	42	10	11	35	1.75
23362--23405	23	2.0	22	82	13	54	15	9	4	70	1.30
23379--23556	76	2.4	73	78	11	184	26	3	1	68	1.14
23398--23604	36	5.7	36	73	18	130	25	3	0	70	1.09
23410--23559	38	3.9	38	77	11	112	27	3	1	68	1.14
23447--23551	47	2.3	46	80	18	114	27	1	0	69	1.05
23494--23556	29	2.1	31	82	11	78	26	1	0	71	0.95
23456--23630	36	4.9	37	71	15	111	22	5	1	71	1.12
23400--23572	76	2.3	76	82	10	198	25	4	1	69	1.13
23431--23604	12	14.7	12	65	20	57	24	3	1	71	1.08
23524--23646	61	2.1	59	82	11	144	17	7	0	73	1.10
28574--29297	84	8.7	83	77	5	694	31	24	19	25	1.98
28581--29297	165	4.3	165	83	4	820	31	24	19	24	1.98
29950--30022	37	2.0	37	94	0	128	41	12	16	30	1.85
30548--30718	33	4.7	34	70	22	93	26	3	1	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30608--30685	40	1.9	39	85	10	104	26	2	1	69	1.09
30617--30695	20	3.9	20	74	15	65	25	2	1	70	1.07
30608--30717	22	5.1	23	69	22	60	25	2	0	70	1.06
30666--30720	21	2.6	22	83	13	64	23	3	0	72	1.00
30689--30731	21	2.0	21	82	8	52	25	6	0	67	1.15
30751--30817	26	2.5	26	79	13	73	19	8	1	70	1.22
31705--31770	27	2.4	27	89	5	96	42	6	3	48	1.43
33953--34086	50	2.7	50	75	6	128	44	2	1	50	1.26
33991--34026	18	1.9	19	88	5	56	38	2	2	55	1.29
33991--34048	27	2.1	28	83	3	73	43	5	1	50	1.35
34033--34076	23	2.0	21	86	8	61	40	2	0	56	1.11
39909--40211	39	7.7	39	73	5	162	43	14	5	36	1.68
39941--40211	79	3.4	78	78	6	244	44	14	5	35	1.68
40234--40359	39	3.3	39	87	4	175	45	10	8	35	1.69
40420--40520	39	2.6	39	79	3	105	40	14	4	39	1.68
40480--40739	59	4.4	56	77	12	213	43	13	5	37	1.68
40528--40771	59	4.2	57	78	9	215	43	13	6	35	1.72
40902--41014	45	2.5	45	87	5	158	36	19	8	35	1.83
43209--43257	20	2.5	20	80	6	55	32	26	24	16	1.96
50201--50227	13	2.1	13	100	0	54	22	11	0	66	1.22
51208--51273	23	2.9	23	70	2	62	77	1	10	10	1.07
56744--57102	188	1.9	183	84	3	477	34	17	10	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57012--57189	78	2.3	78	83	2	234	35	24	8	30	1.86
58263--58420	21	7.8	20	72	7	86	38	25	17	18	1.92
58387--58580	20	9.7	20	84	2	210	35	25	20	19	1.95
58931--59000	33	2.2	32	86	2	95	12	24	15	47	1.81
59080--59184	19	5.6	20	68	18	82	45	19	25	9	1.80
59073--59200	33	3.5	36	85	10	140	46	18	26	8	1.78
59142--59195	14	3.5	14	73	22	54	42	24	25	7	1.80
59137--59211	33	2.3	33	92	0	123	46	24	22	6	1.75
59308--59376	32	2.2	32	89	0	102	13	23	17	46	1.83
59458--59529	20	3.5	20	75	7	74	44	18	26	11	1.83
59456--59533	21	3.8	21	75	16	83	44	16	26	11	1.82
59457--59533	40	1.9	41	91	2	129	44	16	27	11	1.83
59509--59574	29	2.1	32	86	10	93	45	21	25	7	1.78
59600--59687	14	5.7	14	70	26	63	9	25	25	40	1.84
59592--59695	33	3.2	33	93	2	176	9	25	22	43	1.83
59614--59675	19	3.6	18	75	20	69	9	24	25	40	1.85

Tables:   1

The End!