Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003666.1 Hibiscus syriacus cultivar Beakdansim tig00007831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80556
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:3182 original size:19 final size:18
Alignment explanation
Indices: 3121--3181 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 18
3111 AGATTTGACC
*
3121 AAAAGTTTCGAAACTTTGGT
1 AAAAGTTTCAAAAC-TT-GT
*
3141 AAGAGTTTCAAAACTTGT
1 AAAAGTTTCAAAACTTGT
3159 GAAAAGTTTCAAAACTTGT
1 -AAAAGTTTCAAAACTTGT
3178 AAAA
1 AAAA
3182 ATAGTATACT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 6 0.16
19 19 0.51
20 12 0.32
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (18 bp):
AAAAGTTTCAAAACTTGT
Found at i:4039 original size:42 final size:43
Alignment explanation
Indices: 3961--4074 Score: 196
Period size: 42 Copynumber: 2.7 Consensus size: 43
3951 AAGGCACCCA
*
3961 ACAATTTCAAATATGTTGAAAAAAAAGCAAGAAGAAAAAATAC
1 ACAATTTCAAACATGTTGAAAAAAAAGCAAGAAGAAAAAATAC
*
4004 ACAACTTCAAACATGTTGAAAAAAAA-CAAGAAGAAAAAATAC
1 ACAATTTCAAACATGTTGAAAAAAAAGCAAGAAGAAAAAATAC
4046 ACAATTTCAAACATGTTG-AAAAAAAGCAA
1 ACAATTTCAAACATGTTGAAAAAAAAGCAA
4075 TAAACAATGT
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
41 7 0.10
42 36 0.54
43 24 0.36
ACGTcount: A:0.60, C:0.12, G:0.11, T:0.18
Consensus pattern (43 bp):
ACAATTTCAAACATGTTGAAAAAAAAGCAAGAAGAAAAAATAC
Found at i:11530 original size:13 final size:12
Alignment explanation
Indices: 11512--11557 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
11502 GGGTAAAATA
11512 AAAGAAAAAGAGC
1 AAAGAAAAAGA-C
11525 AAAG-AAAA-AC
1 AAAGAAAAAGAC
11535 AAAGGAAAAAGCAC
1 AAA-GAAAAAG-AC
11549 AAAGAAAAA
1 AAAGAAAAA
11558 ATAGGATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 4 0.14
11 2 0.07
12 8 0.28
13 10 0.34
14 5 0.17
ACGTcount: A:0.74, C:0.09, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAGAC
Found at i:11542 original size:24 final size:24
Alignment explanation
Indices: 11506--11557 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
11496 AGGCGAGGGT
*
11506 AAAATAAAAGAAAAAG-AGCAAAGA
1 AAAACAAAAGAAAAAGCA-CAAAGA
*
11530 AAAACAAAGGAAAAAGCACAAAGA
1 AAAACAAAAGAAAAAGCACAAAGA
11554 AAAA
1 AAAA
11558 ATAGGATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.75, C:0.08, G:0.15, T:0.02
Consensus pattern (24 bp):
AAAACAAAAGAAAAAGCACAAAGA
Found at i:13760 original size:42 final size:41
Alignment explanation
Indices: 13714--13821 Score: 117
Period size: 42 Copynumber: 2.6 Consensus size: 41
13704 AAGGAGTTCT
*
13714 TGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCA
1 TGATGA-TAAGTCCTTCGGGCCATCAGTAAGGCTTTCGAGCA
* * * * *
13756 TGATGCATAAATCCTTCAGGTCATCTGTAAGGCTTTCGATCA
1 TGATG-ATAAGTCCTTCGGGCCATCAGTAAGGCTTTCGAGCA
* * *
13798 AGATGATAAGTCCTTTGGACCATC
1 TGATGATAAGTCCTTCGGGCCATC
13822 CATAAGACCT
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 14 0.26
42 38 0.72
43 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (41 bp):
TGATGATAAGTCCTTCGGGCCATCAGTAAGGCTTTCGAGCA
Found at i:14006 original size:20 final size:20
Alignment explanation
Indices: 13981--14041 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
13971 TTTCTTGATA
13981 AGTAAGTCCTTCGGGCCATC
1 AGTAAGTCCTTCGGGCCATC
* * *
14001 AGTAAGTCTTTCGTG-CATG
1 AGTAAGTCCTTCGGGCCATC
14020 ATGCGTAAGTCCTTCGGGCCAT
1 A---GTAAGTCCTTCGGGCCAT
14042 TTATAAGAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 4 0.12
20 13 0.41
22 12 0.38
23 3 0.09
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.30
Consensus pattern (20 bp):
AGTAAGTCCTTCGGGCCATC
Found at i:14107 original size:262 final size:261
Alignment explanation
Indices: 13642--14148 Score: 727
Period size: 262 Copynumber: 1.9 Consensus size: 261
13632 AACTAAGCTT
*
13642 GAGGGACCAACGTAATATGTACGGGTTCCTTGATGACAACTAAGAAACTAAGCTTGATTTTTAAG
1 GAGGGACCAACGTAATATGTACGGGTTCCTTAATGACAACTAAGAAACTAAGCTTGATTTTTAAG
*
13707 GAGTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCATAAATCCTT
66 GAGTTCTTGATAAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCATAAATCCTT
* * * ** *
13772 CAGGTCATCTGTAAGGCTTTCGATCAAGATGATAAGTCCTTTGGACCATCCATAAGACCTTTGGG
131 CAGGCCATCTATAAGGCTTTCGATCAAAATGATAAAACCTTTGGACCATCCATAAGACCTTTAGG
* *
13837 CATGATGTTTTCAACA-TTCCGGCACTTGATTCATCACATATGGAGTTGAATTAGCGTAACCTCA
196 AATGATGTTTTCAACATTTCCGGCACTCGATTCAT--CATATGGAGTTGAATTAGCGTAACCTCA
13901 CTC
259 CTC
* * *
13904 GAGGGACTAACGTGATATGTAGGGGTTCCTTAATGACAACTAAGAAACTAAGCTTGATTTTTAAG
1 GAGGGACCAACGTAATATGTACGGGTTCCTTAATGACAACTAAGAAACTAAGCTTGATTTTTAAG
* * *
13969 G-GTTTCTTGATAAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGTGCATGATGCGTAAGTCCT
66 GAG-TTCTTGATAAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCATAAATCCT
* * *
14033 TCGGGCCATTTATAAGAG-TTTCGAGT-AAAATGATAAAACCTTT-GAGCTATCCATAAGACCTT
130 TCAGGCCATCTATAAG-GCTTTCGA-TCAAAATGATAAAACCTTTGGA-CCATCCATAAGACCTT
* * *
14095 TAGGAATGATGTTTTCAATATTTCTGGTACTCGATTCATCATATGGAGTTGAAT
192 TAGGAATGATGTTTTCAACATTTCCGGCACTCGATTCATCATATGGAGTTGAAT
14149 CAGCAACGCA
Statistics
Matches: 218, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
261 18 0.08
262 183 0.84
263 17 0.08
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (261 bp):
GAGGGACCAACGTAATATGTACGGGTTCCTTAATGACAACTAAGAAACTAAGCTTGATTTTTAAG
GAGTTCTTGATAAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCATAAATCCTT
CAGGCCATCTATAAGGCTTTCGATCAAAATGATAAAACCTTTGGACCATCCATAAGACCTTTAGG
AATGATGTTTTCAACATTTCCGGCACTCGATTCATCATATGGAGTTGAATTAGCGTAACCTCACT
C
Found at i:14600 original size:42 final size:42
Alignment explanation
Indices: 14541--14659 Score: 199
Period size: 40 Copynumber: 2.9 Consensus size: 42
14531 AAGGCACCCA
14541 ACAATTTCAAACATGTTGAAAAAAAGCAAGAAGAAAAAATAC
1 ACAATTTCAAACATGTTGAAAAAAAGCAAGAAGAAAAAATAC
14583 ACAATTTCAAACATGTTGAAAAAAA--AAGAAGAAAAAATAC
1 ACAATTTCAAACATGTTGAAAAAAAGCAAGAAGAAAAAATAC
*
14623 ATAATTTCAAACATGTTGAAAAAAAAGCAAGAA-AAAA
1 ACAATTTCAAACATGTTG-AAAAAAAGCAAGAAGAAAA
14660 TGTACAAGCG
Statistics
Matches: 73, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
40 32 0.44
41 7 0.10
42 29 0.40
43 5 0.07
ACGTcount: A:0.61, C:0.10, G:0.11, T:0.18
Consensus pattern (42 bp):
ACAATTTCAAACATGTTGAAAAAAAGCAAGAAGAAAAAATAC
Found at i:19317 original size:20 final size:21
Alignment explanation
Indices: 19292--19402 Score: 88
Period size: 20 Copynumber: 6.0 Consensus size: 21
19282 AAAATGCTAA
19292 AGTGTA-CCGATACACCCTGC
1 AGTGTATCCGATACACCCTGC
19312 AGTGTATCC-ATACA--CTG-
1 AGTGTATCCGATACACCCTGC
19329 -GTGTA-CCGATACACCCTGC
1 AGTGTATCCGATACACCCTGC
* *
19348 AGTGTATCC-ATAGA--GTG-
1 AGTGTATCCGATACACCCTGC
* *
19365 -GTGTA-CCGATACACTCTAC
1 AGTGTATCCGATACACCCTGC
19384 AGTGTATCCG-TACACCCTG
1 AGTGTATCCGATACACCCTG
19403 GCTGCAACGG
Statistics
Matches: 71, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
15 4 0.06
16 19 0.27
18 9 0.13
20 32 0.45
21 7 0.10
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (21 bp):
AGTGTATCCGATACACCCTGC
Found at i:19340 original size:16 final size:17
Alignment explanation
Indices: 19292--19379 Score: 58
Period size: 16 Copynumber: 4.9 Consensus size: 17
19282 AAAATGCTAA
19292 AGTGTACCGATACACCCTG
1 AGTGTACCGATACA--CTG
19311 CAGTGTATCC-ATACACTG
1 -AGTGTA-CCGATACACTG
19329 -GTGTACCGATACACCCTG
1 AGTGTACCGATACA--CTG
* *
19347 CAGTGTATCC-ATAGAGTG
1 -AGTGTA-CCGATACACTG
19365 -GTGTACCGATACACT
1 AGTGTACCGATACACT
19380 CTACAGTGTA
Statistics
Matches: 56, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
15 4 0.07
16 20 0.36
18 8 0.14
20 20 0.36
21 4 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (17 bp):
AGTGTACCGATACACTG
Found at i:19340 original size:36 final size:36
Alignment explanation
Indices: 19293--19398 Score: 167
Period size: 36 Copynumber: 2.9 Consensus size: 36
19283 AAATGCTAAA
19293 GTGTACCGATACACCCTGCAGTGTATCCATACACTG
1 GTGTACCGATACACCCTGCAGTGTATCCATACACTG
* *
19329 GTGTACCGATACACCCTGCAGTGTATCCATAGAGTG
1 GTGTACCGATACACCCTGCAGTGTATCCATACACTG
* * *
19365 GTGTACCGATACACTCTACAGTGTATCCGTACAC
1 GTGTACCGATACACCCTGCAGTGTATCCATACAC
19399 CCTGGCTGCA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 63 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (36 bp):
GTGTACCGATACACCCTGCAGTGTATCCATACACTG
Found at i:20858 original size:33 final size:34
Alignment explanation
Indices: 20811--20885 Score: 143
Period size: 33 Copynumber: 2.2 Consensus size: 34
20801 TCACTTTAAA
20811 CTCAAATCTATCACATAGATTTGGTTTATAAGAT
1 CTCAAATCTATCACATAGATTTGGTTTATAAGAT
20845 CTCAAAT-TATCACATAGATTTGGTTTATAAGAT
1 CTCAAATCTATCACATAGATTTGGTTTATAAGAT
20878 CTCAAATC
1 CTCAAATC
20886 ACTAATTAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 33 0.82
34 7 0.17
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (34 bp):
CTCAAATCTATCACATAGATTTGGTTTATAAGAT
Found at i:33893 original size:228 final size:229
Alignment explanation
Indices: 33334--34267 Score: 1639
Period size: 229 Copynumber: 4.1 Consensus size: 229
33324 GTTATATTGT
* * *
33334 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
*
33398 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
33463 TAATTTTGTGTG----T--AA--ATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
33520 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
*
33554 AAAGTATATATCATTTTTATAAAAGTGTTCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
* *
33619 ATCTTTGGTTAATATTATTAACTTT-AATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
* *
33683 TAATTTTGTGTATAAATGAAATTATTAAATTAATATTGTATGTGGAAAACATGAAACACTATT-A
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
33747 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
*
33781 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTAACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
33846 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
*
33911 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
33976 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
34010 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
34075 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTAT--AA-ATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
* *
34137 TAATTTT-TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACAATATT-A
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
34200 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
34234 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
34268 GTATAAAAGT
Statistics
Matches: 684, Mismatches: 19, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
220 92 0.13
221 40 0.06
224 70 0.10
225 53 0.08
226 23 0.03
227 123 0.18
228 138 0.20
229 145 0.21
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (229 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:34165 original size:28 final size:27
Alignment explanation
Indices: 34106--34172 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
34096 ATTTAAATTC
34106 TAAATAATATTTTATAAATCAAATAAT
1 TAAATAATATTTTATAAATCAAATAAT
* * * * *
34133 CAAATAATTTTTGTGTAAATGAAATTAT
1 TAAATAATATTT-TATAAATCAAATAAT
34161 TAAATTAATATT
1 TAAA-TAATATT
34173 GTAGGTGGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 10 0.32
28 15 0.48
29 6 0.19
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (27 bp):
TAAATAATATTTTATAAATCAAATAAT
Found at i:34174 original size:28 final size:26
Alignment explanation
Indices: 34084--34174 Score: 67
Period size: 28 Copynumber: 3.3 Consensus size: 26
34074 TATCTTTGGT
* *
34084 TAATATTGTTAAATTTAAATT-CTAAA
1 TAATATTGTTAAA-TCAAATTATTAAA
* * *
34110 TAATATTTTATAAATCAAATAATCAAA
1 TAATATTGT-TAAATCAAATTATTAAA
* *
34137 TAATTTTTGTGTAAATGAAATTATTAAA
1 TAA-TATTGT-TAAATCAAATTATTAAA
34165 TTAATATTGT
1 -TAATATTGT
34175 AGGTGGAAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
26 13 0.27
27 10 0.20
28 23 0.47
29 3 0.06
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.45
Consensus pattern (26 bp):
TAATATTGTTAAATCAAATTATTAAA
Found at i:34220 original size:21 final size:21
Alignment explanation
Indices: 34181--34220 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34171 TTGTAGGTGG
*
34181 AAAATATGAAACAATATTAAA
1 AAAATATGAAACAAAATTAAA
34202 AAAAT-TGAAACATAAATTA
1 AAAATATGAAACA-AAATTA
34221 CATAACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAATATGAAACAAAATTAAA
Found at i:34340 original size:20 final size:19
Alignment explanation
Indices: 34317--34362 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
34307 GATATACCAA
34317 GTAAAAATATGATAAAACCG
1 GTAAAAA-ATGATAAAACCG
34337 GTAACAAAATGATAAAACCG
1 GTAA-AAAATGATAAAACCG
34357 GTAAAA
1 GTAAAA
34363 CGTTACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.57, C:0.11, G:0.15, T:0.17
Consensus pattern (19 bp):
GTAAAAAATGATAAAACCG
Found at i:34620 original size:30 final size:29
Alignment explanation
Indices: 34561--34627 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
34551 GTTACGATAT
* *
34561 ATATTATTATTAAATTAAAAATTCTAAATA
1 ATATT-TTATAAAATTAAAAAATCTAAATA
34591 ATATTTTATAAAATATCAAAAAATC-AAATA
1 ATATTTTATAAAAT-T-AAAAAATCTAAATA
*
34621 ATTTTTT
1 ATATTTT
34628 GTGCAAATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 8 0.25
30 17 0.53
31 7 0.22
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (29 bp):
ATATTTTATAAAATTAAAAAATCTAAATA
Found at i:36854 original size:15 final size:15
Alignment explanation
Indices: 36821--36856 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
36811 AATATGGAAG
*
36821 AAGAAAGGAAATGAT
1 AAGAAAGGAAATGAC
*
36836 AAGAAAGGAAATGGC
1 AAGAAAGGAAATGAC
36851 AAGAAA
1 AAGAAA
36857 TGATATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.61, C:0.03, G:0.28, T:0.08
Consensus pattern (15 bp):
AAGAAAGGAAATGAC
Found at i:37066 original size:13 final size:13
Alignment explanation
Indices: 37048--37105 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
37038 TAGGCATGCA
37048 ATGGTGATGGAAG
1 ATGGTGATGGAAG
*
37061 ATGGTGAT-G-AT
1 ATGGTGATGGAAG
* *
37072 ATAGGCG-T-GAAA
1 AT-GGTGATGGAAG
37084 ATGGTGATGGAAG
1 ATGGTGATGGAAG
37097 ATGGTGATG
1 ATGGTGATG
37106 AACAAACAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
11 8 0.22
12 8 0.22
13 20 0.56
ACGTcount: A:0.31, C:0.02, G:0.41, T:0.26
Consensus pattern (13 bp):
ATGGTGATGGAAG
Found at i:37094 original size:36 final size:35
Alignment explanation
Indices: 36991--37106 Score: 178
Period size: 35 Copynumber: 3.3 Consensus size: 35
36981 TGGTAAGGGA
* * *
36991 ATGGTGATGATATAAGCGTGAAATGGAGATAGAAG
1 ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
* *
37026 ATGGTGATGATATAGGCATGCAATGGTGATGGAAG
1 ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
37061 ATGGTGATGATATAGGCGTGAAAATGGTGATGGAAG
1 ATGGTGATGATATAGGCGTG-AAATGGTGATGGAAG
37097 ATGGTGATGA
1 ATGGTGATGA
37107 ACAAACAGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 49 0.67
36 24 0.33
ACGTcount: A:0.34, C:0.03, G:0.37, T:0.25
Consensus pattern (35 bp):
ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
Found at i:41060 original size:35 final size:35
Alignment explanation
Indices: 41014--41129 Score: 187
Period size: 35 Copynumber: 3.3 Consensus size: 35
41004 TGGTAAGGGA
*
41014 ATGGTGATGATATAGGCGTGAAATGGTGATAGAAG
1 ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
* *
41049 ATGGTGATGATATAGGCATGCAATGGTGATGGAAG
1 ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
*
41084 ATGGTGATGTTATAGGCGTGAAAATGGTGATGGAAG
1 ATGGTGATGATATAGGCGTG-AAATGGTGATGGAAG
41120 ATGGTGATGA
1 ATGGTGATGA
41130 ACAGATAGAA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 50 0.68
36 23 0.32
ACGTcount: A:0.32, C:0.03, G:0.38, T:0.27
Consensus pattern (35 bp):
ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
Found at i:41089 original size:13 final size:13
Alignment explanation
Indices: 41071--41128 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
41061 TAGGCATGCA
41071 ATGGTGATGGAAG
1 ATGGTGATGGAAG
** *
41084 ATGGTGATGTTAT
1 ATGGTGATGGAAG
* *
41097 A-GGCG-T-GAAA
1 ATGGTGATGGAAG
41107 ATGGTGATGGAAG
1 ATGGTGATGGAAG
41120 ATGGTGATG
1 ATGGTGATG
41129 AACAGATAGA
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
10 2 0.06
11 4 0.12
12 4 0.12
13 23 0.70
ACGTcount: A:0.29, C:0.02, G:0.41, T:0.28
Consensus pattern (13 bp):
ATGGTGATGGAAG
Found at i:41726 original size:20 final size:21
Alignment explanation
Indices: 41687--41729 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
41677 TGCTTGAATG
41687 ATGCACATGGCAGCCTTCTTGA
1 ATGCACATGG-AGCCTTCTTGA
*
41709 ATGCACATGG-GTCTTCTTGA
1 ATGCACATGGAGCCTTCTTGA
41729 A
1 A
41730 ATGCTTTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
22 10 0.50
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (21 bp):
ATGCACATGGAGCCTTCTTGA
Found at i:45713 original size:16 final size:17
Alignment explanation
Indices: 45687--45719 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
45677 TTTATTTTTA
45687 TAAATGTATAGTAATGG
1 TAAATGTATAGTAATGG
45704 TAAA-GTATAGTAATGG
1 TAAATGTATAGTAATGG
45720 CAATTGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.33
Consensus pattern (17 bp):
TAAATGTATAGTAATGG
Found at i:47896 original size:34 final size:34
Alignment explanation
Indices: 47830--47902 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
47820 TTCATGTTCA
47830 AAATTCCAAAAACTTCAATTACATTCTAAACCCT
1 AAATTCCAAAAACTTCAATTACATTCTAAACCCT
* * **
47864 AAATTCTAAAATACTTTAATTGTATTCT-AACCCT
1 AAATTCCAAAA-ACTTCAATTACATTCTAAACCCT
47898 AAATT
1 AAATT
47903 AAAGTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 21 0.62
35 13 0.38
ACGTcount: A:0.42, C:0.21, G:0.01, T:0.36
Consensus pattern (34 bp):
AAATTCCAAAAACTTCAATTACATTCTAAACCCT
Found at i:48539 original size:43 final size:43
Alignment explanation
Indices: 48491--48582 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
48481 TACACTTATC
* * * **
48491 AACCAACACTGCCATTCATCTCATTTTCATTATTGGCTTAGCA
1 AACCAACACTACCAGTAATCTCATTTTCACCATTGGCTTAGCA
48534 AACCAACACTACCAGTAATCTCATTTTCACCATTGGCTTAGCA
1 AACCAACACTACCAGTAATCTCATTTTCACCATTGGCTTAGCA
48577 AACCAA
1 AACCAA
48583 ACCGACAATC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.29
Consensus pattern (43 bp):
AACCAACACTACCAGTAATCTCATTTTCACCATTGGCTTAGCA
Found at i:49333 original size:31 final size:31
Alignment explanation
Indices: 49298--49366 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
49288 CATTTAGGAT
* *
49298 AAGTGATCATATCTTAATTAAAACAAAACGA
1 AAGTGACCACATCTTAATTAAAACAAAACGA
* * * *
49329 AAGTGGCCACATTTTAATTAAAACGAATCGA
1 AAGTGACCACATCTTAATTAAAACAAAACGA
49360 AAGTGAC
1 AAGTGAC
49367 TACGAATTAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.25
Consensus pattern (31 bp):
AAGTGACCACATCTTAATTAAAACAAAACGA
Found at i:50927 original size:16 final size:17
Alignment explanation
Indices: 50890--50928 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
50880 CAACTTTAAA
* *
50890 TTTATTATATTTGAAGT
1 TTTATTATATGTGAACT
50907 TTTATTATATGTG-ACT
1 TTTATTATATGTGAACT
50923 TTTATT
1 TTTATT
50929 TAAAGATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.62
Consensus pattern (17 bp):
TTTATTATATGTGAACT
Found at i:54257 original size:23 final size:24
Alignment explanation
Indices: 54206--54250 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
54196 ACTTAGTGAG
* *
54206 ACATAATCAATAATTCAAAATAAA
1 ACATAATCAATAATACAAAACAAA
54230 ACATAAT-AATAATACAAAACA
1 ACATAATCAATAATACAAAACA
54251 TATCATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.64, C:0.13, G:0.00, T:0.22
Consensus pattern (24 bp):
ACATAATCAATAATACAAAACAAA
Found at i:55639 original size:21 final size:21
Alignment explanation
Indices: 55615--55673 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
55605 GTTGGGAGCG
*
55615 TAGGTGCATTGGTACACCCTA
1 TAGGTGCATCGGTACACCCTA
55636 TAGGTGCATCGGTACACCCTA
1 TAGGTGCATCGGTACACCCTA
55657 TAGGTGCATCGGTACAC
1 TAGGTGCATCGGTACAC
55674 TATGTGTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (21 bp):
TAGGTGCATCGGTACACCCTA
Found at i:55803 original size:64 final size:65
Alignment explanation
Indices: 55734--55887 Score: 194
Period size: 64 Copynumber: 2.4 Consensus size: 65
55724 ACACTTGGTA
* * *
55734 TGCATCGGTACACT-AATTACATTCGA-GTTTCAA-AAGAGA-CAGGAGTGCATCGATGCATGGT
1 TGCATCGGTACACTAAAATACATTCGATGTATCAATAA-A-ATCAGGAGTGCATCAATGCATGG-
55795 CTG
63 CTG
*
55798 TGCATCGGTACA-TAAAATGCATTCGATGTATCAATAAAATCAGGAGTGCATCAATGCATGGCTG
1 TGCATCGGTACACTAAAATACATTCGATGTATCAATAAAATCAGGAGTGCATCAATGCATGGCTG
*
55862 TGCATCGGTACAC-AAAATGCATTCGA
1 TGCATCGGTACACTAAAATACATTCGA
55888 ATTAGGGTGT
Statistics
Matches: 81, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
63 1 0.01
64 51 0.63
65 27 0.33
66 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (65 bp):
TGCATCGGTACACTAAAATACATTCGATGTATCAATAAAATCAGGAGTGCATCAATGCATGGCTG
Found at i:56044 original size:18 final size:18
Alignment explanation
Indices: 56018--56053 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
56008 AAAACACAAT
*
56018 TTTATACTTTAGTAAGGA
1 TTTACACTTTAGTAAGGA
56036 TTTACACTTTAGTAAGGA
1 TTTACACTTTAGTAAGGA
56054 CTGAAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (18 bp):
TTTACACTTTAGTAAGGA
Found at i:56261 original size:13 final size:13
Alignment explanation
Indices: 56243--56276 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
56233 TAAGATTTTC
*
56243 TTTGAAAATCATT
1 TTTGAAAATCAAT
56256 TTTG-AAATCAAT
1 TTTGAAAATCAAT
56268 TTTGAAAAT
1 TTTGAAAAT
56277 TACCCCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTTGAAAATCAAT
Found at i:56586 original size:27 final size:28
Alignment explanation
Indices: 56552--56619 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
56542 TTATTCAAAC
* *
56552 AAATCAAAC-GTCCAAAATATATATTCA
1 AAATCAAACAATCCAAAATAAATATTCA
*
56579 AAATCAAACAATCCAAACTAAATATTCAA
1 AAATCAAACAATCCAAAATAAATATTC-A
56608 AAATCCAAACAA
1 AAAT-CAAACAA
56620 ACAAAGCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.26
28 14 0.40
29 5 0.14
30 7 0.20
ACGTcount: A:0.57, C:0.21, G:0.01, T:0.21
Consensus pattern (28 bp):
AAATCAAACAATCCAAAATAAATATTCA
Found at i:56603 original size:28 final size:28
Alignment explanation
Indices: 56552--56640 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 28
56542 TTATTCAAAC
* * *
56552 AAATCAAAC-GTCCAAAATATATATTCA
1 AAATCAAACAATCCAAACTAAATATTCA
56579 AAATCAAACAATCCAAACTAAATATTCAA
1 AAATCAAACAATCCAAACTAAATATTC-A
* *
56608 AAATCCAAACAA-ACAAAGCCAAATATTCA
1 AAAT-CAAACAATCCAAA-CTAAATATTCA
56637 AAAT
1 AAAT
56641 GTTTAAACAC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
27 9 0.17
28 14 0.26
29 14 0.26
30 16 0.30
ACGTcount: A:0.57, C:0.20, G:0.02, T:0.20
Consensus pattern (28 bp):
AAATCAAACAATCCAAACTAAATATTCA
Found at i:58607 original size:23 final size:23
Alignment explanation
Indices: 58580--58650 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
58570 TGAATAGTGT
58580 ATCGATGCACATTCAATGAATGC
1 ATCGATGCACATTCAATGAATGC
* * *
58603 ATCGATACATC-TTC-AT-AGTGT
1 ATCGATGCA-CATTCAATGAATGC
* * *
58624 ATCAATGCATATTCAAGGAATGC
1 ATCGATGCACATTCAATGAATGC
58647 ATCG
1 ATCG
58651 GAACACTTTC
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 13 0.38
22 3 0.09
23 17 0.50
24 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (23 bp):
ATCGATGCACATTCAATGAATGC
Found at i:58638 original size:21 final size:21
Alignment explanation
Indices: 58573--58638 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
58563 GGTACACTGA
*
58573 ATAGTGTATCGATGCACATTC
1 ATAGTGTATCGATGCATATTC
* * * *
58594 AATGAATGCATCGATACATCTTC
1 -AT-AGTGTATCGATGCATATTC
*
58617 ATAGTGTATCAATGCATATTC
1 ATAGTGTATCGATGCATATTC
58638 A
1 A
58639 AGGAATGCAT
Statistics
Matches: 33, Mismatches: 10, Indels: 3
0.72 0.22 0.07
Matches are distributed among these distances:
21 15 0.45
22 4 0.12
23 14 0.42
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (21 bp):
ATAGTGTATCGATGCATATTC
Found at i:58638 original size:44 final size:44
Alignment explanation
Indices: 58573--58678 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
58563 GGTACACTGA
* *
58573 ATAGTGTATCGATGCACATTCAATGAATGCATC-GATACA-TCTTC
1 ATAGTGTATCAATGCACATTCAAGGAATGCATCGGA-ACACT-TTC
*
58617 ATAGTGTATCAATGCATATTCAAGGAATGCATCGGAACACTTTC
1 ATAGTGTATCAATGCACATTCAAGGAATGCATCGGAACACTTTC
*
58661 ATAGTGTATCTATGCACA
1 ATAGTGTATCAATGCACA
58679 ATGTACAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 52 0.95
45 3 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (44 bp):
ATAGTGTATCAATGCACATTCAAGGAATGCATCGGAACACTTTC
Found at i:64535 original size:65 final size:64
Alignment explanation
Indices: 64425--64577 Score: 220
Period size: 65 Copynumber: 2.4 Consensus size: 64
64415 ATAAGACCTA
* *
64425 GTGCATCGGTACACT-AATTACATTCGATGTTTCAAAAGAGCCAGGAGTGCATCGATGCATGGTC
1 GTGCATCGGTACA-TAAAATACATTCGATGTTTCAAAAGAACCAGGAGTGCATCGATGCATGG-C
64489 T
64 T
*
64490 GTGCATCGGTACATAAAATACATTCGATGTTTCAATAA-AATCAGGAGTGCATCGATGCATGGCT
1 GTGCATCGGTACATAAAATACATTCGATGTTTCAA-AAGAACCAGGAGTGCATCGATGCATGGCT
* *
64554 GTGCATCGGTACACAAAATGCATT
1 GTGCATCGGTACATAAAATACATT
64578 TGAAATAGGG
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
64 25 0.31
65 54 0.67
66 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (64 bp):
GTGCATCGGTACATAAAATACATTCGATGTTTCAAAAGAACCAGGAGTGCATCGATGCATGGCT
Found at i:68553 original size:6 final size:6
Alignment explanation
Indices: 68445--68554 Score: 61
Period size: 6 Copynumber: 18.2 Consensus size: 6
68435 GATTTCAATT
*
68445 TTATT- TTATTA TTTATT- TTAGTTA CTT-TTA TTTATTTA TTTTTA TT-TTA
1 TTATTA TTATTA -TTATTA TTA-TTA -TTATTA -TTA-TTA TTATTA TTATTA
* * * * *
68494 TTATAA TTACTA TTATTG TTATTA TTGTTA TTA-TA TTTTTA TTAGTT-
1 TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTA-TTA
68541 TTAATTA TTATTA T
1 TT-ATTA TTATTA T
68555 AGGTAAACAT
Statistics
Matches: 81, Mismatches: 12, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
5 17 0.21
6 47 0.58
7 12 0.15
8 5 0.06
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (6 bp):
TTATTA
Found at i:72078 original size:27 final size:27
Alignment explanation
Indices: 72021--72080 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
72011 AAACTTTTCC
*
72021 AAATTTATTCTTTGGTCACCAAACATT
1 AAATTTATTCTTTGGTCACCAAACATA
*
72048 AAATTTATTCATTTTGGTCA-CTAACA-A
1 AAATTTATTC--TTTGGTCACCAAACATA
72075 AAATTT
1 AAATTT
72081 TAGGGTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 16 0.55
28 5 0.17
29 8 0.28
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.42
Consensus pattern (27 bp):
AAATTTATTCTTTGGTCACCAAACATA
Found at i:72899 original size:22 final size:22
Alignment explanation
Indices: 72874--72927 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
72864 ATGAACTACA
*
72874 TTAGCATTGATAATAAAGTTCC
1 TTAGCATTGATAATAAAGTGCC
* * *
72896 TTAGCAATAATATTAAAGTGCC
1 TTAGCATTGATAATAAAGTGCC
*
72918 TT-GAATTGAT
1 TTAGCATTGAT
72928 TGAAGTATAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (22 bp):
TTAGCATTGATAATAAAGTGCC
Found at i:79161 original size:23 final size:23
Alignment explanation
Indices: 79117--79165 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
79107 ATAAAGAACC
*
79117 AAAATAAACTTAAATATACCATT
1 AAAATAAACTTAAACATACCATT
*
79140 AAAATAAAGTTAAAACAT-CCATT
1 AAAATAAACTT-AAACATACCATT
79163 AAA
1 AAA
79166 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAACTTAAACATACCATT
Done.