genome.fa.s3667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003667.1 Hibiscus syriacus cultivar Beakdansim tig00007834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107722

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7772--7840	23	3.0	23	82	0	93	33	24	23	18	1.97
15585--15611	2	13.5	2	100	0	54	48	0	0	51	1.00
19081--19120	21	1.9	21	84	0	53	40	15	10	35	1.80
20028--20071	21	2.1	21	83	8	54	31	2	4	61	1.28
27813--27841	14	2.1	14	93	6	51	55	0	6	37	1.27
28336--28432	44	2.2	44	85	10	128	27	21	22	27	1.99
28359--28432	24	3.4	21	75	15	71	27	20	22	29	1.98
38333--38394	31	1.9	33	87	6	92	45	1	16	37	1.57
42069--42105	16	2.2	18	85	9	51	43	5	2	48	1.40
47064--47103	21	1.9	21	94	0	71	30	15	7	47	1.72
47098--47196	33	3.0	33	94	1	164	32	7	15	45	1.73
47182--47236	13	4.2	13	75	13	58	34	3	12	49	1.59
47432--47488	21	2.7	21	91	0	96	19	26	26	28	1.99
49407--49483	37	2.1	38	82	7	95	31	16	11	40	1.85
49494--49578	37	2.3	36	87	2	116	24	20	14	41	1.89
49407--49782	102	3.7	102	87	2	481	30	19	11	38	1.88
49609--49683	36	2.1	36	97	0	141	29	21	12	37	1.89
49407--50188	101	7.7	100	79	9	597	29	19	11	39	1.86
49595--50333	137	5.5	132	76	13	488	29	19	11	39	1.86
49771--49833	21	3.3	20	70	25	64	30	20	1	47	1.60
49609--49999	173	2.2	174	87	1	570	29	19	10	39	1.86
49698--49853	36	4.3	36	86	3	181	29	20	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49769--49830	15	3.4	19	71	24	69	30	19	1	48	1.58
49879--50076	36	5.7	36	72	17	175	30	19	11	38	1.87
50122--50216	36	2.8	32	82	6	100	24	21	12	42	1.87
49508--50333	412	2.0	407	81	7	952	29	19	11	39	1.87
50352--50422	37	1.9	37	88	0	106	26	15	12	45	1.82
52648--52684	16	2.2	18	85	9	51	43	5	2	48	1.40
56701--56777	37	2.1	38	82	7	95	31	16	11	40	1.85
56788--56872	37	2.3	36	87	2	116	24	20	14	41	1.89
56701--57151	102	4.4	102	83	5	516	30	19	11	38	1.87
56903--56977	36	2.1	36	97	0	141	29	21	12	37	1.89
56701--57479	101	7.6	101	78	12	599	30	19	11	39	1.86
56890--56977	36	2.4	35	90	3	131	29	20	11	38	1.87
56889--57628	137	5.5	132	76	12	486	29	19	11	39	1.87
56992--57146	36	4.3	36	85	2	206	28	20	10	40	1.86
56896--57293	173	2.3	174	87	1	584	29	19	11	38	1.87
57173--57370	36	5.7	36	72	17	175	30	18	11	38	1.87
57416--57510	36	2.8	34	84	6	113	24	20	12	43	1.86
57504--57563	29	2.0	30	84	9	79	33	20	11	35	1.88
57647--57717	37	1.9	37	88	0	106	26	15	12	45	1.82
59941--59977	16	2.2	18	85	9	51	43	5	2	48	1.40
64521--64653	30	4.2	30	83	13	178	46	0	2	51	1.13
64520--64679	45	3.3	48	81	15	181	45	0	3	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64596--64695	22	4.4	22	67	12	67	39	0	9	52	1.33
64521--64653	15	8.5	15	84	11	160	46	0	2	51	1.13
64633--64939	80	3.8	80	88	6	481	33	0	12	53	1.39
64703--64842	32	4.7	32	80	16	192	34	0	12	52	1.40
64736--64778	22	2.0	22	95	0	77	37	0	11	51	1.39
64704--64954	54	4.6	55	76	15	277	34	0	11	53	1.38
64633--64954	166	1.9	166	96	0	590	34	0	12	53	1.38
64902--64944	22	2.0	22	100	0	86	34	0	13	51	1.42
64969--65027	31	1.9	31	89	0	91	44	10	5	40	1.60
67563--67606	23	2.0	23	81	4	54	50	11	2	36	1.51
75212--75241	12	2.5	12	88	0	51	33	30	36	0	1.58
79610--79942	165	2.0	166	99	0	659	34	12	10	41	1.78
86455--86497	18	2.4	18	88	0	59	18	6	6	67	1.37
89166--89296	48	2.7	47	81	6	122	50	29	12	8	1.69
89166--89296	16	8.2	16	73	6	97	50	29	12	8	1.69
89840--89885	12	3.9	12	75	16	51	69	0	0	30	0.89
90354--90456	31	3.3	31	91	1	161	39	37	10	11	1.77
90418--90513	32	3.0	31	81	6	111	33	30	15	20	1.94
91446--91476	2	16.0	2	93	6	55	48	0	0	51	1.00
98522--98560	14	2.8	14	88	0	60	64	2	28	5	1.28
98516--98557	14	2.7	16	78	17	52	64	2	28	4	1.26
102041--102105	18	3.4	18	76	12	76	49	16	4	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102021--102103	39	2.1	39	95	0	148	50	18	4	26	1.66
102133--102212	25	3.0	25	82	10	72	25	26	1	47	1.60
102209--102287	19	4.2	18	76	15	56	32	17	10	39	1.83
102221--102289	19	3.7	18	82	5	75	33	15	10	40	1.81
105185--105262	38	2.0	39	95	2	140	33	16	15	34	1.90

Tables:   1

The End!