genome.fa.s3668.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003668.1 Hibiscus syriacus cultivar Beakdansim tig00007838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76902

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8402--8467	14	4.8	13	80	9	69	42	13	22	21	1.88
12088--12129	20	2.1	20	91	8	68	23	14	19	42	1.87
12731--12844	41	2.8	40	75	7	104	26	29	19	24	1.98
17921--17945	13	1.9	13	100	0	50	40	8	8	44	1.63
19437--19475	18	2.2	18	86	4	53	66	12	2	17	1.35
22323--22375	14	3.8	14	75	9	54	24	16	3	54	1.59
23976--24042	31	2.2	31	100	0	134	31	16	11	40	1.85
26627--26781	38	4.0	39	85	2	188	28	21	14	35	1.93
26630--26784	77	2.0	76	87	1	220	28	20	14	36	1.92
27102--27476	36	10.3	37	83	4	410	35	19	21	24	1.96
27102--27472	73	5.1	72	81	5	401	35	19	21	23	1.96
27124--27472	181	1.9	182	86	2	497	35	19	21	23	1.96
27604--27742	55	2.5	55	89	0	206	33	19	18	28	1.95
27997--28044	3	17.0	3	85	12	66	35	2	0	62	1.07
36034--36107	29	2.5	28	82	8	85	39	25	5	29	1.78
36141--36165	13	1.9	13	100	0	50	16	16	48	20	1.82
36143--36202	18	3.4	18	88	4	95	11	21	48	18	1.80
36146--36193	17	2.8	17	90	3	69	14	20	45	18	1.85
39772--39820	19	2.5	19	86	3	62	36	12	30	20	1.89
40478--40991	67	7.8	67	86	5	694	31	14	24	28	1.95
40697--40943	123	2.0	124	87	2	354	33	14	23	28	1.94
40940--41094	81	1.9	81	89	0	238	37	13	20	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41124--41342	45	4.9	45	86	3	271	46	7	21	25	1.77
41130--41368	45	5.3	45	82	6	150	44	7	21	25	1.79
46043--46083	21	2.0	21	90	0	64	43	2	2	51	1.28
48313--48354	16	2.6	16	92	0	75	23	28	7	40	1.81
53051--53099	16	3.1	16	78	0	62	24	20	6	48	1.72
59980--60023	21	2.2	20	83	4	52	59	2	6	31	1.36
60192--60655	134	3.5	134	83	0	563	28	16	22	32	1.96
66239--66286	20	2.6	18	78	21	55	72	6	0	20	1.05
66250--66282	16	2.0	17	88	5	50	75	6	0	18	1.00
70139--70180	22	2.0	20	86	13	59	71	0	0	28	0.86
73439--73500	29	2.1	29	96	0	115	29	20	17	32	1.96
75447--75471	12	2.1	12	100	0	50	64	8	0	28	1.22

Tables:   1

The End!