Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003669.1 Hibiscus syriacus cultivar Beakdansim tig00007842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103964

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4660--4695
11
3.3
11
88
0
54
16
8
2
72
1.21
4705--4748
19
2.2
20
88
4
63
22
6
0
70
1.11
8749--8803
14
3.9
14
78
2
56
25
40
18
16
1.91
13571--13639
29
2.4
29
85
0
84
49
15
2
31
1.60
13679--13747
29
2.4
29
90
0
93
43
24
5
26
1.76
15578--15634
24
2.4
24
90
0
87
43
33
7
15
1.74
15593--15645
24
2.2
24
83
6
63
41
33
7
16
1.77
17455--17500
21
2.1
22
84
4
58
36
19
8
34
1.83
31016--31200
71
2.5
75
82
12
224
55
11
1
31
1.43
31068--31095
12
2.3
12
100
0
56
60
0
0
39
0.97
31020--31207
76
2.6
71
84
9
220
56
11
1
30
1.41
32867--32954
5
17.0
5
68
11
52
69
1
7
21
1.21
32905--32954
21
2.4
21
86
0
73
74
2
8
16
1.15
38199--38244
24
1.9
24
86
8
67
36
13
0
50
1.41
37214--38312
554
2.0
557
87
4
1608
33
12
6
47
1.67
38334--38425
14
6.3
15
70
16
68
50
0
11
38
1.40
38425--38482
18
3.1
18
76
14
55
41
3
3
51
1.35
39344--39373
3
10.0
3
100
0
60
66
0
0
33
0.92
41143--41193
22
2.3
22
93
0
84
31
23
19
25
1.98
43222--43254
17
1.9
17
93
0
57
30
30
0
39
1.57
46403--46436
11
3.1
11
86
0
50
29
38
17
14
1.90
49678--49720
19
2.4
17
84
11
50
23
0
9
67
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50788--50814
10
2.7
10
100
0
54
25
18
22
33
1.97
52977--53010
16
2.1
17
88
5
52
32
2
20
44
1.67
58704--58798
33
2.8
34
87
6
140
37
22
15
24
1.93
63509--63543
15
2.4
14
90
4
52
22
8
0
68
1.16
76595--76625
12
2.6
12
100
0
62
19
19
25
35
1.95
81047--81212
46
3.6
46
88
0
242
22
25
10
41
1.86
81199--81657
46
10.0
46
90
1
695
22
22
11
43
1.85
81047--81373
158
2.1
158
90
1
512
22
24
10
42
1.85
88413--89004
46
12.9
46
84
2
733
21
20
12
44
1.85
88501--88994
20
21.8
20
66
24
141
21
21
12
44
1.85
93629--93991
180
2.0
181
91
0
584
46
10
9
33
1.70
95682--95723
22
2.0
22
85
4
59
16
9
7
66
1.42
103474--103527
26
2.1
26
96
0
99
18
16
18
46
1.85

Tables:   1

The End!