genome.fa.s367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000367.1 Hibiscus syriacus cultivar Beakdansim tig00000667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60520

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2451--2489	20	1.9	21	94	5	71	28	30	5	35	1.79
3443--3467	12	2.1	12	100	0	50	32	16	20	32	1.94
5586--5620	18	1.9	18	94	0	61	60	8	0	31	1.27
5890--6434	279	2.0	274	93	4	925	44	9	7	39	1.65
9517--9574	20	2.6	22	86	10	75	25	22	22	29	1.99
9562--9702	64	2.2	63	79	7	151	26	24	17	32	1.96
10701--10820	64	1.9	64	85	0	168	35	20	19	25	1.96
11514--11570	23	2.5	23	85	0	78	22	19	22	35	1.96
15797--15841	21	2.1	22	83	4	56	51	8	15	24	1.72
16874--16933	23	2.6	23	97	0	111	16	28	28	26	1.97
21540--21584	23	2.0	23	90	0	72	22	26	22	28	1.99
23768--23805	18	2.1	18	95	0	67	31	13	10	44	1.77
23856--23915	30	2.0	30	90	0	93	31	5	20	43	1.73
23996--24052	21	2.7	21	100	0	114	21	35	19	24	1.96
24476--24545	34	2.1	32	86	5	95	31	15	30	22	1.95
25405--25452	19	2.5	20	82	3	62	52	6	12	29	1.63
26571--26749	89	2.0	89	98	0	349	36	14	10	38	1.81
26820--26877	30	1.9	30	89	0	89	32	3	18	44	1.67
26958--27014	21	2.7	21	100	0	114	21	35	19	24	1.96
29198--29258	31	2.0	31	87	3	88	32	26	16	24	1.96
29207--29271	31	2.1	31	91	0	103	36	21	18	23	1.95
30162--30219	20	2.6	22	84	10	75	27	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32739--32803	31	2.1	31	91	5	105	35	21	18	24	1.96
33694--33751	20	2.6	22	84	10	75	27	22	18	31	1.97
33739--33879	64	2.2	63	80	12	155	25	22	18	33	1.97
40988--41040	24	2.3	23	80	3	61	56	1	0	41	1.10
41176--41215	20	2.0	21	85	14	57	52	2	5	40	1.37
45350--45382	17	1.9	17	88	11	50	36	3	0	60	1.12
51307--51616	53	5.9	53	84	4	421	21	27	19	31	1.97
51321--51615	158	1.9	158	90	2	477	22	26	18	32	1.97
51289--51672	53	7.2	53	82	7	397	23	27	18	30	1.98
51323--51671	158	2.2	157	85	4	425	23	27	18	30	1.98
51545--51821	55	5.1	54	83	11	252	26	27	18	27	1.98
51609--51976	106	3.5	106	86	6	439	27	27	16	29	1.97
51609--51989	51	7.3	51	88	5	446	27	27	16	28	1.97
53336--53401	19	3.9	18	78	21	72	9	19	0	71	1.12
53353--53452	43	2.2	45	83	11	118	7	17	1	75	1.08
53429--53471	7	6.1	7	80	0	50	4	11	0	83	0.78
53333--53461	8	15.5	8	66	17	59	6	17	0	75	1.04
53392--53452	12	4.5	12	73	25	50	3	14	1	80	0.92
53343--53453	44	2.4	46	79	13	122	6	17	0	75	1.05
53343--53465	45	2.7	46	76	13	119	6	17	0	75	1.05

Tables:   1

The End!