Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003671.1 Hibiscus syriacus cultivar Beakdansim tig00007844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84168

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8233--8277
21
2.1
21
87
0
63
22
22
22
33
1.97
11339--11387
24
2.0
24
88
0
71
44
10
12
32
1.75
19571--19598
2
14.0
2
100
0
56
50
0
0
50
1.00
20057--20137
27
3.0
27
72
16
69
46
1
2
49
1.23
20157--20202
24
2.0
24
82
4
58
52
2
2
43
1.25
20252--20321
14
5.0
14
72
5
52
52
4
0
42
1.20
20305--20358
28
1.9
28
88
7
83
51
0
0
48
1.00
20271--20391
25
4.9
25
68
21
76
50
0
0
47
1.12
20296--20387
22
4.2
21
67
17
62
50
0
1
48
1.08
23388--23416
12
2.3
13
88
11
51
58
0
0
41
0.98
23391--23417
12
2.2
12
100
0
54
62
0
0
37
0.95
23818--23851
2
17.0
2
100
0
68
50
0
0
50
1.00
29221--29282
32
1.9
32
83
0
79
37
16
17
29
1.92
29286--29383
44
2.2
44
92
0
160
28
37
15
18
1.91
33799--33825
13
2.1
13
100
0
54
22
25
14
37
1.93
36244--36383
42
3.4
42
87
4
178
34
17
22
25
1.96
38424--38529
51
2.1
51
98
0
203
31
16
13
39
1.86
44418--44460
19
2.2
20
83
4
52
74
0
4
20
1.00
46085--46113
5
5.8
5
100
0
58
20
0
41
37
1.53
50726--50769
23
1.9
23
95
0
79
25
11
11
52
1.70
53710--53735
12
2.2
12
100
0
52
26
15
7
50
1.71
54917--55075
28
5.6
28
76
11
146
36
6
5
51
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54891--55024
56
2.4
55
83
3
171
40
5
5
48
1.50
58355--58388
17
2.0
17
100
0
68
41
0
11
47
1.40
66679--66730
21
2.5
21
87
6
70
23
3
36
36
1.73
74087--74122
18
2.0
18
94
0
63
27
41
8
22
1.82
76620--76696
33
2.5
31
85
10
111
41
19
7
31
1.80
76682--76733
19
2.7
19
72
3
50
44
17
5
32
1.72
79255--79304
19
2.6
19
96
0
91
14
34
10
42
1.78
82527--82679
64
2.4
63
82
6
184
33
19
19
27
1.96
83180--83238
30
1.9
31
89
3
93
35
20
15
28
1.93
83923--83962
20
2.0
20
85
5
53
22
5
20
52
1.65

Tables:   1

The End!