genome.fa.s3672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003672.1 Hibiscus syriacus cultivar Beakdansim tig00007845_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57015

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3019--3131	59	1.9	60	83	5	149	49	12	24	13	1.76
5041--5096	2	31.5	2	73	22	54	50	1	0	48	1.11
6143--6175	16	1.9	18	88	11	52	36	0	3	60	1.12
15133--15193	32	1.9	31	83	3	77	24	9	24	40	1.85
15597--15641	23	1.9	24	86	4	65	44	0	4	51	1.21
15936--16018	32	2.6	32	92	0	130	13	13	27	45	1.80
15879--16014	16	8.5	16	69	3	85	10	12	30	46	1.75
16267--16332	30	2.2	31	86	2	89	30	24	7	37	1.83
17587--17623	17	2.2	17	86	13	51	54	0	8	37	1.30
18138--18170	4	8.2	4	100	0	66	75	0	0	24	0.80
21634--21685	20	2.6	20	96	0	95	38	26	13	21	1.90
21675--21773	21	4.8	20	72	6	72	36	23	19	21	1.95
21740--21933	20	9.6	20	81	5	221	35	25	19	19	1.95
21740--21933	60	3.2	60	83	0	253	35	25	19	19	1.95
22314--22384	33	2.2	33	92	0	115	11	22	18	47	1.80
22505--22559	14	3.6	14	73	21	56	40	23	27	9	1.85
22505--22575	33	2.2	33	92	0	115	42	25	23	8	1.82
22571--22668	19	5.7	19	70	22	81	10	24	22	42	1.84
22593--22682	14	5.7	14	74	23	81	8	25	23	42	1.83
22576--22690	33	3.5	33	95	0	212	9	24	20	45	1.81
24385--24766	185	2.1	186	98	0	748	22	12	18	46	1.83
24385--24764	93	4.1	93	98	0	744	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24808--24936	19	7.3	19	75	17	125	45	28	17	8	1.77
24844--24936	33	2.8	32	91	4	150	46	27	18	7	1.76
24808--24936	52	2.5	52	74	14	140	45	28	17	8	1.77
24932--25066	19	7.6	19	76	16	137	10	19	24	45	1.81
24954--25010	14	3.7	14	77	20	60	8	21	24	45	1.80
24937--25029	33	2.8	33	98	0	177	9	20	22	47	1.79
26874--26946	38	1.9	38	97	0	137	28	1	16	53	1.51
26870--26933	19	3.4	19	64	10	51	25	1	15	57	1.47
26928--26963	14	2.6	14	95	0	63	33	0	22	44	1.53
27070--27171	19	5.6	19	84	13	151	44	17	23	14	1.86
27200--27525	19	18.4	19	80	15	405	14	20	17	47	1.82
27178--27497	52	6.0	52	94	4	550	14	21	16	46	1.83
27200--27525	71	4.6	72	82	13	389	14	20	17	47	1.82
27178--27497	161	2.0	157	93	3	552	14	21	16	46	1.83
27219--27525	33	8.8	33	80	12	280	14	20	17	47	1.82
29828--29852	12	2.1	12	100	0	50	0	28	0	72	0.86
30027--30073	24	2.0	24	87	8	69	38	21	14	25	1.92
30747--31115	20	18.5	20	86	4	458	20	18	26	34	1.96
32761--32878	60	2.0	60	81	6	141	29	24	19	26	1.98
34684--34862	90	2.0	89	91	4	288	43	15	8	32	1.76
37093--37136	20	2.3	19	81	11	54	6	6	18	68	1.35
37613--37660	2	24.0	2	91	0	78	50	4	0	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37605--37655	24	2.1	24	100	0	102	50	7	0	41	1.31
40831--40867	4	9.2	4	93	0	65	51	27	0	21	1.48
41260--41314	21	2.6	21	91	0	83	23	1	30	43	1.64
50511--50591	22	3.7	22	76	0	90	32	24	18	24	1.97
53470--53515	20	2.3	20	92	3	76	36	23	0	39	1.55

Tables:   1

The End!