genome.fa.s3673.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003673.1 Hibiscus syriacus cultivar Beakdansim tig00007847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93206

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2210--2290	39	2.1	39	100	0	162	22	7	24	45	1.77
6813--6885	30	2.4	30	95	0	128	32	23	19	24	1.97
6838--6943	31	3.5	29	82	6	95	33	21	17	27	1.96
11545--11617	30	2.4	30	95	0	128	31	23	19	26	1.98
11553--11644	30	3.0	30	88	1	112	34	23	18	22	1.96
11603--11695	31	3.0	31	79	3	98	34	21	17	26	1.95
33110--33154	23	2.0	23	90	0	72	24	26	26	22	2.00
33122--33438	151	2.1	149	92	2	519	34	20	17	27	1.95
34328--34362	18	1.9	18	88	11	54	22	17	5	54	1.64
34831--34991	64	2.5	63	84	8	191	27	21	18	33	1.96
38156--38461	149	2.1	149	96	0	558	34	21	17	27	1.95
39209--39234	2	13.0	2	100	0	52	50	0	0	50	1.00
39360--39394	18	1.9	18	88	11	54	22	17	5	54	1.64
39861--40021	64	2.5	63	84	8	191	27	21	18	33	1.96
44754--44846	21	4.5	21	78	4	100	39	17	25	17	1.91
44835--44969	20	6.7	20	78	4	110	33	23	17	25	1.96
44754--44846	41	2.3	41	98	0	177	39	17	25	17	1.91
45131--45174	22	2.0	22	95	0	79	20	45	15	18	1.85
45381--45431	19	2.7	19	100	0	102	41	27	21	9	1.84
45473--45515	20	2.2	20	95	0	77	9	18	18	53	1.70
46785--46829	18	2.5	18	88	0	72	26	44	15	13	1.83
47311--47364	19	2.8	20	86	5	67	35	24	24	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47349--47444	19	5.6	19	67	25	70	44	20	20	13	1.85
47365--47422	14	3.9	14	72	24	55	46	22	18	12	1.82
47349--47439	32	2.8	33	88	3	148	46	20	19	13	1.83
47456--47513	14	3.9	14	79	16	71	8	17	25	48	1.75
47451--47529	32	2.4	33	95	2	142	10	18	24	46	1.80
47470--47587	20	6.4	19	77	11	95	13	20	24	41	1.88
49572--49620	19	2.6	19	86	0	71	48	16	16	18	1.81
49658--49715	20	2.9	20	92	0	98	15	20	24	39	1.91
50771--50824	24	2.2	24	86	0	72	25	14	20	38	1.91
50999--51023	12	2.1	12	100	0	50	72	0	28	0	0.86
53319--53448	19	7.7	19	64	25	85	43	19	23	14	1.87
53320--53450	33	4.0	32	84	9	176	41	19	22	16	1.89
53320--53451	66	2.0	65	95	1	237	41	18	22	16	1.90
53444--53486	20	2.2	20	87	4	61	16	18	23	41	1.89
53627--53663	14	2.6	14	91	0	65	45	24	0	29	1.53
57142--57283	20	7.8	19	68	18	70	43	22	21	11	1.85
57167--57265	33	3.0	33	89	1	144	39	26	23	11	1.88
57284--57364	19	4.5	19	73	16	73	9	17	23	49	1.76
57879--57931	20	2.7	20	93	0	88	26	20	28	24	1.99
59874--59932	21	2.8	21	82	7	57	50	0	1	47	1.11
61121--61196	30	2.5	30	81	12	84	38	10	11	39	1.77
64549--64890	171	2.0	167	93	6	582	32	18	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74664--74755	44	2.0	46	91	4	152	32	22	27	17	1.96
74664--74747	23	3.7	23	82	6	109	32	25	26	16	1.96
77517--77557	20	2.0	21	85	4	57	26	26	19	26	1.99
80423--80499	34	2.2	35	86	2	111	20	23	38	16	1.92
83144--83172	15	2.0	15	93	6	51	24	0	13	62	1.32
86454--86528	39	1.9	38	94	2	132	34	26	0	38	1.57
87435--87488	20	2.8	20	83	8	67	37	11	18	33	1.86
87495--87561	20	3.3	20	89	2	98	32	13	16	37	1.88
89364--89399	17	2.1	16	90	10	54	5	25	5	63	1.38
91127--91166	17	2.4	17	95	0	71	22	27	20	30	1.98
91318--91358	21	2.1	19	86	9	55	36	17	19	26	1.94
92434--92476	14	3.1	14	90	6	61	18	9	9	62	1.51
92429--92481	24	2.2	24	86	0	70	18	11	11	58	1.62
92532--92583	17	3.1	16	83	5	59	44	15	0	40	1.46
93085--93140	3	19.3	3	87	7	71	64	0	0	35	0.94
93085--93140	23	2.4	23	87	0	76	64	0	0	35	0.94

Tables:   1

The End!