genome.fa.s3675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003675.1 Hibiscus syriacus cultivar Beakdansim tig00007850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106702

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441--1405	84	11.9	83	75	9	771	31	23	19	26	1.98
441--1453	161	6.2	163	77	7	665	31	22	19	25	1.98
441--1454	245	4.2	245	78	9	841	31	22	19	25	1.98
2073--2414	36	9.6	37	74	19	195	45	4	7	42	1.53
2139--2422	34	8.1	36	74	18	196	45	5	7	42	1.54
2073--2414	38	9.6	34	75	18	194	45	4	7	42	1.53
2148--2422	35	7.8	35	74	14	151	45	5	6	42	1.53
2440--2515	25	2.9	26	79	15	77	18	3	2	75	1.08
4734--4794	29	2.0	31	84	6	81	42	4	22	29	1.75
6874--6965	45	2.0	45	95	0	166	41	6	22	29	1.79
6875--6948	25	3.2	25	62	31	63	39	8	22	29	1.83
10491--10543	20	2.7	19	88	8	79	28	56	1	13	1.47
15828--16301	113	4.2	113	76	5	375	34	12	14	38	1.84
15835--16301	114	4.1	111	76	3	360	34	12	14	38	1.84
15978--16355	112	3.4	113	76	8	378	32	11	16	39	1.85
17878--17916	19	2.1	19	90	0	60	51	17	2	28	1.59
21509--21605	47	2.0	48	88	2	142	46	10	10	32	1.72
26656--26698	2	21.5	2	100	0	86	51	0	0	48	1.00
30395--30433	18	2.2	18	86	9	53	35	0	2	61	1.10
32133--32179	2	23.5	2	100	0	94	51	0	0	48	1.00
39662--39733	20	3.6	20	90	3	110	25	19	23	31	1.98
42108--42153	16	3.0	16	78	18	53	19	6	0	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42632--42696	31	2.1	32	94	2	114	38	20	9	32	1.84
55460--55525	34	1.9	34	93	0	114	22	28	25	22	1.99
59404--59460	2	28.5	2	96	0	105	52	0	47	0	1.00
66887--66938	13	3.7	13	72	18	50	40	13	3	42	1.62
66879--66938	30	2.0	30	100	0	120	36	13	3	46	1.60
73645--74024	189	2.0	189	97	0	724	41	13	15	29	1.86
78368--78450	29	2.8	29	94	1	148	40	13	14	31	1.84
83357--83437	29	2.8	29	96	1	144	40	12	14	32	1.83
88347--88429	29	2.8	29	94	1	148	40	13	14	31	1.84
91425--91468	22	1.9	22	81	9	52	43	0	11	45	1.40
96594--96626	14	2.4	14	90	5	50	45	0	21	33	1.52
97846--97886	17	2.3	18	91	4	66	31	9	31	26	1.89
98268--98828	248	2.3	242	84	11	743	40	19	13	26	1.88
101337--101377	15	2.6	16	96	3	75	34	4	21	39	1.75
101537--101576	14	2.9	15	78	14	50	45	0	25	30	1.54
104922--104952	3	10.7	3	93	6	55	35	0	0	64	0.94
104920--104952	17	1.9	17	100	0	66	36	0	0	63	0.95
104925--104952	14	2.0	14	100	0	56	35	0	0	64	0.94

Tables:   1

The End!